RNA 3D Hub //

Equivalence class NR_4.0_71282.3 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12C4Q|1|R (rep)5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.382005-11-07
22C4Y|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.682006-01-05
32C4Q|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.382005-11-07
42BU1|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.22005-08-18
52C4Y|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.682006-01-05
62IZ8|1|RRNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-7) COMPLEXX-ray diffraction3.32006-07-27
72C4Z|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.62006-01-05
82C4Z|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.62006-01-05
92C51|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.82006-01-05
102BU1|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.22005-08-18
112C50|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.652006-01-05
122C51|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.82006-01-05
132IZ8|1|SRNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-7) COMPLEXX-ray diffraction3.32006-07-27
142C50|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.652006-01-05
151ZDH|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructSyntheticMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
161ZDH|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructSyntheticMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
172BQ5|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.912006-03-22
182BNY|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87A mutant) - RNA hairpin complexX-ray diffraction32006-03-22
192BQ5|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.912006-03-22
202BNY|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87A mutant) - RNA hairpin complexX-ray diffraction32006-03-22
211AQ4|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2VirusesSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction31997-12-24
221AQ3|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.81997-12-24
231AQ3|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.81997-12-24
241AQ4|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2VirusesSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction31997-12-24
252IZ9|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-ray diffraction2.852006-07-27
262IZ9|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-ray diffraction2.852006-07-27
272IZM|1|R5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.72007-07-03
282IZM|1|S5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.72007-07-03
291ZDI|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
302B2E|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-ray diffraction3.152006-05-09
312B2G|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-ray diffraction3.022006-05-09
321ZDK|1|RRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.861998-12-07
331ZDK|1|SRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.861998-12-07
341ZDI|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
352B2E|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-ray diffraction3.152006-05-09
362B2G|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-ray diffraction3.022006-05-09

Release history

Release9.169.179.189.199.209.219.229.239.24
Date2018-11-162018-11-232018-11-302018-12-052018-12-122018-12-192018-12-262019-01-022019-01-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_71282.3NR_4.0_71282.29.16(36) 2IZ8|1|R, 2BNY|1|R, 2C50|1|S, 2B2E|1|S, 2C4Z|1|S, 1ZDK|1|S, 2C4Y|1|R, 1ZDI|1|R, 2C4Q|1|R, 1ZDH|1|R, 2IZ9|1|S, 1AQ3|1|S, 2BQ5|1|S, 2IZ8|1|S, 2BNY|1|S, 2C51|1|R, 2B2G|1|R, 2C50|1|R, 2B2E|1|R, 2C4Y|1|S, 1ZDI|1|S, 2C4Q|1|S, 1ZDH|1|S, 2BU1|1|R, 2IZM|1|R, 1AQ4|1|R, 2IZ9|1|R, 1AQ3|1|R, 2BQ5|1|R, 2C51|1|S, 2B2G|1|S, 2C4Z|1|R, 1ZDK|1|R, 2BU1|1|S, 2IZM|1|S, 1AQ4|1|S(0) (2) 1KUO|1|R, 1KUO|1|S

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
12B2E|1|STitle: RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-RAY DIFFRACTION3.1514
22B2E|1|RTitle: RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-RAY DIFFRACTION3.1516
32B2G|1|STitle: MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-RAY DIFFRACTION3.0215
42B2G|1|RTitle: MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-RAY DIFFRACTION3.0216
52C51|1|STitle: MS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.813
62C50|1|STitle: MS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6513
72BU1|1|STitle: MS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.216
82C4Q|1|STitle: MS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3816
92BU1|1|RTitle: MS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.216
102C4Q|1|RTitle: MS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3816
112IZ8|1|RTitle: MS2-RNA HAIRPIN (C-7) COMPLEXX-RAY DIFFRACTION3.316
122IZ8|1|STitle: MS2-RNA HAIRPIN (C-7) COMPLEXX-RAY DIFFRACTION3.313
132IZM|1|STitle: MS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
141AQ3|1|STitle: BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.812
151AQ4|1|STitle: STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION314
161ZDI|1|STitle: RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
171ZDH|1|STitle: MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
181ZDK|1|STitle: STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
192IZM|1|RTitle: MS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
201ZDK|1|RTitle: STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
211ZDH|1|RTitle: MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
221ZDI|1|RTitle: RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.716
231AQ4|1|RTitle: STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION316
241AQ3|1|RTitle: BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.816
252C51|1|RTitle: MS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.815
262C50|1|RTitle: MS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6514
272BNY|1|RTitle: MS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION315
282BNY|1|STitle: MS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION313
292C4Z|1|STitle: MS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.611
302C4Y|1|STitle: MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6812
312BQ5|1|STitle: MS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9117
322BQ5|1|RTitle: MS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9119
332C4Y|1|RTitle: MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6816
342C4Z|1|RTitle: MS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.615
352IZ9|1|RTitle: MS2-RNA HAIRPIN (4ONE -5) COMPLEXX-RAY DIFFRACTION2.8514
362IZ9|1|STitle: MS2-RNA HAIRPIN (4ONE -5) COMPLEXX-RAY DIFFRACTION2.8514

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0213 s