Equivalence class NR_4.0_71158.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 359D|1|B (rep) | RNA HAMMERHEAD RIBOZYME | INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III) | X-ray diffraction | 2.9 | 1997-11-07 | ||||
| 2 | 300D|1|B | RNA HAMMERHEAD RIBOZYME | CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKED | X-ray diffraction | 3 | 1997-01-24 | ||||
| 3 | 301D|1|B | RNA HAMMERHEAD RIBOZYME | CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MG(II)-SOAKED | X-ray diffraction | 3 | 1997-01-24 | ||||
| 4 | 1MME|1|B | RNA HAMMERHEAD RIBOZYME | THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE | X-ray diffraction | 3.1 | 1996-02-06 | ||||
| 5 | 299D|1|B | RNA HAMMERHEAD RIBOZYME | CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYME | X-ray diffraction | 3 | 1997-01-24 | ||||
| 6 | 1MME|1|D | RNA HAMMERHEAD RIBOZYME | THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE | X-ray diffraction | 3.1 | 1996-02-06 | ||||
| 7 | 488D|1|D | RNA RIBOZYME STRAND, FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE, SECOND RNA FRAGMENT OF CLEAVED SUBSTRATE, UNCLEAVED RNA SUBSTRATE | CATALYTIC RNA ENZYME-PRODUCT COMPLEX | X-ray diffraction | 3.1 | 2000-03-06 | ||||
| 8 | 379D|1|B | RNA (5'-R(*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*A P*GP*UP*CP*AP*CP*CP*AP*C)-3') | THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGE | X-ray diffraction | 3.1 | 1998-02-11 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2014-12-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1MME|1|D | Title: THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE | X-RAY DIFFRACTION | 3.1 | 25 | ||
| 2 | 359D|1|B | Title: INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III) | X-RAY DIFFRACTION | 2.9 | 25 | ||
| 3 | 1MME|1|B | Title: THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE | X-RAY DIFFRACTION | 3.1 | 25 | ||
| 4 | 300D|1|B | Title: CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKED | X-RAY DIFFRACTION | 3 | 25 | ||
| 5 | 299D|1|B | Title: CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYME | X-RAY DIFFRACTION | 3 | 25 | ||
| 6 | 301D|1|B | Title: CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MG(II)-SOAKED | X-RAY DIFFRACTION | 3 | 25 | ||
| 7 | 488D|1|D | Title: CATALYTIC RNA ENZYME-PRODUCT COMPLEX | X-RAY DIFFRACTION | 3.1 | 25 | ||
| 8 | 379D|1|B | Title: THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGE | X-RAY DIFFRACTION | 3.1 | 25 |
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