Equivalence class NR_4.0_70990.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4PDQ|1|A+ 4PDQ|1|B (rep) | RNA (5'-*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C-3') | synthetic construct | Synthetic | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analog | X-ray diffraction | 3 | 2015-01-07 |
Release history
| Release | 5.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_70990.1 | NR_all_33419.1 | 5.0 | (1) 4PDQ|1|A+4PDQ|1|B | (0) | (38) 1LC4|1|A+1LC4|1|B, 1YRJ|1|A+1YRJ|1|B, 2ESI|1|A+2ESI|1|B, 2F4T|1|B+2F4T|1|A, 2FQN|1|A+2FQN|1|B, 2G5K|1|A+2G5K|1|B, 2O3V|1|A+2O3V|1|B, 2O3W|1|A+2O3W|1|B, 2O3X|1|A+2O3X|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNR|1|A+3BNR|1|B, 3BNR|1|C+3BNR|1|D, 3BNS|1|A+3BNS|1|B, 3BNS|1|C+3BNS|1|D, 3TD0|1|B+3TD0|1|A, 3TD1|1|B+3TD1|1|A, 3WRU|1|A+3WRU|1|B, 4GPW|1|A+4GPW|1|B, 4GPX|1|A+4GPX|1|B, 4GPY|1|A+4GPY|1|B, 4K31|1|B+4K31|1|C, 4K32|1|A+4K32|1|B, 4P20|1|A+4P20|1|B, 4P3S|1|B+4P3S|1|A, 4P3T|1|A+4P3T|1|B, 4P3U|1|B+4P3U|1|A, 4P3U|1|C+4P3U|1|D, 4P43|1|B+4P43|1|A, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4WCQ|1|A+4WCQ|1|B, 4WCR|1|A+4WCR|1|B, 4WCS|1|A+4WCS|1|B, 5BWS|1|A+5BWS|1|B, 5BWS|1|C+5BWS|1|D, 5BXK|1|A+5BXK|1|B, 5BXK|1|C+5BXK|1|D |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_70990.1 | NR_4.0_96165.1 | 6.0 | (1) 4PDQ|1|A+4PDQ|1|B | (0) | (3) 1MWL|1|A+1MWL|1|B, 2PWT|1|A+2PWT|1|B, 5BWS|1|A+5BWS|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4PDQ|1|A+4PDQ|1|B | Title: Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analog | X-RAY DIFFRACTION | 3 | 23 |
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