NR_4.0_70469.3

Members (28)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4FEN\|1\|B (rep)	Purine riboswitch	A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-ray diffraction	1.35	2013-02-27
2	4FEO\|1\|B	Purine riboswitch	U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine	X-ray diffraction	1.6	2013-02-27
3	4FEL\|1\|B	Purine riboswitch	U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-ray diffraction	1.6	2013-02-27
4	4FEP\|1\|B	Purine riboswitch	A24U/U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine	X-ray diffraction	1.65	2013-02-27
5	4FEJ\|1\|B	Purine riboswitch	A24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-ray diffraction	1.5	2013-02-27
6	4FE5\|1\|B	Purine riboswitch	xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-ray diffraction	1.32	2012-06-27
7	2XNZ\|1\|A	Purine riboswitch	Guanine riboswitch	Bacillus subtilis	Bacteria	RF00167	xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening	X-ray diffraction	1.59	2011-04-06
8	2XNW\|1\|A	Purine riboswitch	GUANINE RIBOSWITCH	Bacillus subtilis	Bacteria	RF00167	XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING	X-ray diffraction	1.5	2011-04-06
9	3GOT\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine riboswitch C74U mutant bound to 2-fluoroadenine.	X-ray diffraction	1.95	2009-06-23
10	2G9C\|1\|A	Purine riboswitch	guanine riboswitch			RF00167	Modified pyrimidines Specifically bind the purine riboswitch	X-ray diffraction	1.7	2006-11-21
11	3GAO\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Crystal structure of the guanine riboswitch bound to xanthine.	X-ray diffraction	1.9	2009-06-23
12	3GER\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine riboswitch bound to 6-chloroguanine	X-ray diffraction	1.7	2009-06-23
13	2EES\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine riboswitch A21U, U75A mutant bound to hypoxanthine	X-ray diffraction	1.75	2007-11-13
14	3GOG\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine	X-ray diffraction	2.1	2009-06-23
15	3DS7\|1\|A	Purine riboswitch	67-MER			RF00167	Structure of an RNA-2'-deoxyguanosine complex	X-ray diffraction	1.85	2009-02-17
16	2EET\|1\|A	Purine riboswitch	Guanine Riboswitch			RF00167	Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine	X-ray diffraction	1.95	2007-11-13
17	3FO4\|1\|A	Purine riboswitch	Guanine riboswitch C74U mutant			RF00167	Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine	X-ray diffraction	1.9	2009-06-23
18	2EEV\|1\|A	Purine riboswitch	guanine riboswitch			RF00167	Guanine riboswitch U22C, A52G mutant bound to hypoxanthine	X-ray diffraction	1.95	2007-11-13
19	3DS7\|1\|B	Purine riboswitch	67-MER			RF00167	Structure of an RNA-2'-deoxyguanosine complex	X-ray diffraction	1.85	2009-02-17
20	5C7U\|1\|B	Purine riboswitch	5'-monophosphate wt guanine riboswitch	Bacillus subtilis	Bacteria	RF00167	5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine.	X-ray diffraction	3.05	2015-08-12
21	3FO6\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Crystal structure of guanine riboswitch bound to 6-O-methylguanine	X-ray diffraction	1.9	2009-06-23
22	3G4M\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Crystal structure of guanine riboswitch bound to 2-aminopurine	X-ray diffraction	2.4	2009-06-23
23	3GES\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine	X-ray diffraction	2.15	2009-06-23
24	2B57\|1\|A	Purine riboswitch	65-MER			RF00167	Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine	X-ray diffraction	2.15	2006-05-23
25	2EEW\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine Riboswitch U47C mutant bound to hypoxanthine	X-ray diffraction	2.25	2007-11-13
26	2EEU\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine riboswitch U22A, A52U mutant bound to hypoxanthine	X-ray diffraction	1.95	2007-11-13
27	5C7W\|1\|C	Purine riboswitch	5'-monophosphate Z:P guanine riboswitch	synthetic construct	Synthetic	RF00167	5'-monophosphate Z:P Guanine Riboswitch bound to hypoxanthine.	X-ray diffraction	3.22	2015-08-12
28	2XO1\|1\|A	Purine riboswitch	Guanine riboswitch	Bacillus subtilis	Bacteria	RF00167	xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine	X-ray diffraction	1.6	2011-04-06

Release history

Release	9.16	9.17	9.18	9.19	9.20	9.21	9.22	9.23	9.24
Date	2018-11-16	2018-11-23	2018-11-30	2018-12-05	2018-12-12	2018-12-19	2018-12-26	2019-01-02	2019-01-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_70469.3	NR_4.0_70469.2	9.16	(28) 4FEP\|1\|B, 2XO1\|1\|A, 4FEL\|1\|B, 2G9C\|1\|A, 4FE5\|1\|B, 2EEV\|1\|A, 3GES\|1\|A, 2EES\|1\|A, 3GAO\|1\|A, 3FO4\|1\|A, 5C7U\|1\|B, 3DS7\|1\|A, 4FEN\|1\|B, 2XNW\|1\|A, 4FEJ\|1\|B, 2EEW\|1\|A, 3GOG\|1\|A, 2EET\|1\|A, 3GER\|1\|A, 2B57\|1\|A, 3FO6\|1\|A, 5C7W\|1\|C, 3DS7\|1\|B, 4FEO\|1\|B, 2XNZ\|1\|A, 3GOT\|1\|A, 2EEU\|1\|A, 3G4M\|1\|A	(0)	(2) 1U8D\|1\|A, 2XO0\|1\|A

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	3DS7\|1\|B	Title: Structure of an RNA-2'-deoxyguanosine complex	X-RAY DIFFRACTION	1.85	67
2	3DS7\|1\|A	Title: Structure of an RNA-2'-deoxyguanosine complex	X-RAY DIFFRACTION	1.85	67
3	2EEV\|1\|A	Title: Guanine riboswitch U22C, A52G mutant bound to hypoxanthine	X-RAY DIFFRACTION	1.95	67
4	3GES\|1\|A	Title: Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine	X-RAY DIFFRACTION	2.15	67
5	3GAO\|1\|A	Title: Crystal structure of the guanine riboswitch bound to xanthine.	X-RAY DIFFRACTION	1.9	67
6	2XNW\|1\|A	Title: XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING	X-RAY DIFFRACTION	1.5	65
7	2EEU\|1\|A	Title: Guanine riboswitch U22A, A52U mutant bound to hypoxanthine	X-RAY DIFFRACTION	1.95	67
8	2EEW\|1\|A	Title: Guanine Riboswitch U47C mutant bound to hypoxanthine	X-RAY DIFFRACTION	2.25	67
9	4FEJ\|1\|B	Title: Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-RAY DIFFRACTION	1.5	67
10	2EET\|1\|A	Title: Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine	X-RAY DIFFRACTION	1.95	67
11	3GOG\|1\|A	Title: Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine	X-RAY DIFFRACTION	2.1	65
12	3FO6\|1\|A	Title: Crystal structure of guanine riboswitch bound to 6-O-methylguanine	X-RAY DIFFRACTION	1.9	67
13	2XO1\|1\|A	Title: xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine	X-RAY DIFFRACTION	1.6	65
14	4FE5\|1\|B	Title: Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-RAY DIFFRACTION	1.32	67
15	3FO4\|1\|A	Title: Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine	X-RAY DIFFRACTION	1.9	63
16	3GER\|1\|A	Title: Guanine riboswitch bound to 6-chloroguanine	X-RAY DIFFRACTION	1.7	67
17	2G9C\|1\|A	Title: Modified pyrimidines Specifically bind the purine riboswitch	X-RAY DIFFRACTION	1.7	67
18	2XNZ\|1\|A	Title: xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening	X-RAY DIFFRACTION	1.59	65
19	2EES\|1\|A	Title: Guanine riboswitch A21U, U75A mutant bound to hypoxanthine	X-RAY DIFFRACTION	1.75	67
20	3GOT\|1\|A	Title: Guanine riboswitch C74U mutant bound to 2-fluoroadenine.	X-RAY DIFFRACTION	1.95	67
21	2B57\|1\|A	Title: Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine	X-RAY DIFFRACTION	2.15	65
22	3G4M\|1\|A	Title: Crystal structure of guanine riboswitch bound to 2-aminopurine	X-RAY DIFFRACTION	2.4	67
23	4FEL\|1\|B	Title: Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-RAY DIFFRACTION	1.6	67
24	4FEP\|1\|B	Title: Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine	X-RAY DIFFRACTION	1.65	67
25	4FEN\|1\|B	Title: Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-RAY DIFFRACTION	1.35	67
26	4FEO\|1\|B	Title: Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine	X-RAY DIFFRACTION	1.6	67
27	5C7U\|1\|B	Title: 5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine.	X-RAY DIFFRACTION	3.05	67
28	5C7W\|1\|C	Title: 5'-monophosphate Z:P Guanine Riboswitch bound to hypoxanthine.	X-RAY DIFFRACTION	3.22	65

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_70469.3 Current

Release history

Parents

Children