Equivalence class NR_4.0_69812.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4XWW|1|E (rep) | RNA (5'-D(UP*UP*UP*UP*UP*UP*U)-3') | synthetic construct | Synthetic | Crystal structure of RNase J complexed with RNA | X-ray diffraction | 1.7 | 2015-12-16 | ||
| 2 | 2G4B|1|B | 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' | Structure of U2AF65 variant with polyuridine tract | X-ray diffraction | 2.5 | 2006-07-25 | ||||
| 3 | 2XZO|1|D | 5'-R(*UP*UP*UP*UP*UP*UP*UP)-3' | synthetic construct | Synthetic | Upf1 helicase - RNA complex | X-ray diffraction | 2.39 | 2011-03-30 | ||
| 4 | 1DDL|1|D | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') | DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-ray diffraction | 2.7 | 2000-10-30 | ||||
| 5 | 4XWW|1|D | RNA (5'-D(UP*UP*UP*UP*UP*UP*U)-3') | synthetic construct | Synthetic | Crystal structure of RNase J complexed with RNA | X-ray diffraction | 1.7 | 2015-12-16 | ||
| 6 | 3G0H|1|E | 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' | Human dead-box RNA helicase DDX19, in complex with an ATP-analogue and RNA | X-ray diffraction | 2.7 | 2009-02-17 | ||||
| 7 | 1M8V|1|O | 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-ray diffraction | 2.6 | 2003-02-11 | ||||
| 8 | 1M8V|1|P | 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-ray diffraction | 2.6 | 2003-02-11 | ||||
| 9 | 1M8V|1|Q | 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-ray diffraction | 2.6 | 2003-02-11 | ||||
| 10 | 1M8V|1|R | 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-ray diffraction | 2.6 | 2003-02-11 | ||||
| 11 | 1M8V|1|S | 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-ray diffraction | 2.6 | 2003-02-11 | ||||
| 12 | 1M8V|1|U | 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-ray diffraction | 2.6 | 2003-02-11 | ||||
| 13 | 1M8V|1|T | 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-ray diffraction | 2.6 | 2003-02-11 | ||||
| 14 | 2VOO|1|C | 5'-R(*UP*UP*UP*UP*UP*UP*UP)-3' | Homo sapiens | Eukarya | Crystal structure of N-terminal domains of Human La protein complexed with RNA oligomer UUUUUUUU | X-ray diffraction | 1.8 | 2008-05-06 | ||
| 15 | 2VOO|1|D | 5'-R(*UP*UP*UP*UP*UP*UP*UP)-3' | Homo sapiens | Eukarya | Crystal structure of N-terminal domains of Human La protein complexed with RNA oligomer UUUUUUUU | X-ray diffraction | 1.8 | 2008-05-06 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1M8V|1|P | Title: Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-RAY DIFFRACTION | 2.6 | 6 | ||
| 2 | 1M8V|1|S | Title: Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-RAY DIFFRACTION | 2.6 | 6 | ||
| 3 | 1M8V|1|U | Title: Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-RAY DIFFRACTION | 2.6 | 6 | ||
| 4 | 1M8V|1|T | Title: Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-RAY DIFFRACTION | 2.6 | 5 | ||
| 5 | 1M8V|1|Q | Title: Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-RAY DIFFRACTION | 2.6 | 6 | ||
| 6 | 1M8V|1|O | Title: Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-RAY DIFFRACTION | 2.6 | 6 | ||
| 7 | 1M8V|1|R | Title: Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer | X-RAY DIFFRACTION | 2.6 | 6 | ||
| 8 | 2G4B|1|B | Title: Structure of U2AF65 variant with polyuridine tract | X-RAY DIFFRACTION | 2.5 | 7 | ||
| 9 | 1DDL|1|D | Title: DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-RAY DIFFRACTION | 2.7 | 7 | ||
| 10 | 4XWW|1|E | Title: Crystal structure of RNase J complexed with RNA | X-RAY DIFFRACTION | 1.7 | 7 | ||
| 11 | 4XWW|1|D | Title: Crystal structure of RNase J complexed with RNA | X-RAY DIFFRACTION | 1.7 | 7 | ||
| 12 | 3G0H|1|E | Title: Human dead-box RNA helicase DDX19, in complex with an ATP-analogue and RNA | X-RAY DIFFRACTION | 2.7 | 7 | ||
| 13 | 2XZO|1|D | Title: Upf1 helicase - RNA complex | X-RAY DIFFRACTION | 2.39 | 7 | ||
| 14 | 2VOO|1|D | Title: Crystal structure of N-terminal domains of Human La protein complexed with RNA oligomer UUUUUUUU | X-RAY DIFFRACTION | 1.8 | 3 | ||
| 15 | 2VOO|1|C | Title: Crystal structure of N-terminal domains of Human La protein complexed with RNA oligomer UUUUUUUU | X-RAY DIFFRACTION | 1.8 | 3 |
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