#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V7R|1|D1+ 4V7R|1|D3 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome.X-ray diffraction42014-07-09
24V7R|1|B1+ 4V7R|1|B3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome.X-ray diffraction42014-07-09
35TGM|1|5+ 5TGM|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.52017-01-18
45TGM|1|1+ 5TGM|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.52017-01-18
55FCI|1|1+ 5FCI|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.42016-05-11
65FCI|1|5+ 5FCI|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.42016-05-11
75FCJ|1|1+ 5FCJ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.12016-05-11
85FCJ|1|5+ 5FCJ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.12016-05-11
95LYB|1|1+ 5LYB|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.252016-11-23
105LYB|1|5+ 5LYB|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.252016-11-23
115I4L|1|1+ 5I4L|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
125I4L|1|5+ 5I4L|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
134V88|1|A1+ 4V88|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
144V88|1|A5+ 4V88|1|A8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
155GAK|1|1+ 5GAK|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AElectron microscopy3.882016-02-24
164U4O|1|1+ 4U4O|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
174U4O|1|5+ 4U4O|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
185APN|1|5+ 5APN|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1Electron microscopy3.912015-12-16
195JUO|1|B+ 5JUO|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)Electron microscopy42016-10-05
205JUT|1|B+ 5JUT|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)Electron microscopy42016-10-05
215JUU|1|B+ 5JUU|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)Electron microscopy42016-10-05
225MC6|1|BQ+ 5MC6|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeElectron microscopy3.82017-01-18
234U56|1|5+ 4U56|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
244U56|1|1+ 4U56|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
255APO|1|5+ 5APO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.412015-12-16
265JUP|1|B+ 5JUP|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.52016-10-05
274U53|1|5+ 4U53|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
284U53|1|1+ 4U53|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
294U50|1|1+ 4U50|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
304U50|1|5+ 4U50|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
315H4P|1|1+ 5H4P|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1Electron microscopy3.072017-01-25
324U55|1|1+ 4U55|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
334U51|1|1+ 4U51|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
344U51|1|5+ 4U51|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
354U4Y|1|1+ 4U4Y|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
365M1J|1|14+ 5M1J|1|44Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nonstop ribosomal complex bound with Dom34 and Hbs1Electron microscopy3.32017-01-18
374U55|1|5+ 4U55|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
384U3N|1|1+ 4U3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
394U4Y|1|5+ 4U4Y|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
404U3N|1|5+ 4U3N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
415T62|1|A+ 5T62|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S Ribosomal RNA, 5.8S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexElectron microscopy3.32017-02-08
424U4Z|1|1+ 4U4Z|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
434U4Z|1|5+ 4U4Z|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
444U4N|1|1+ 4U4N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
454U4N|1|5+ 4U4N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
463JCT|1|1+ 3JCT|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN58-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.082016-06-01
474U6F|1|5+ 4U6F|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
484U6F|1|1+ 4U6F|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
494U52|1|1+ 4U52|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
504U52|1|5+ 4U52|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
514U4U|1|5+ 4U4U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
524U4Q|1|1+ 4U4Q|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
534U4U|1|1+ 4U4U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
544U3M|1|5+ 4U3M|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
554U4Q|1|5+ 4U4Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
564U3M|1|1+ 4U3M|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
574U3U|1|1+ 4U3U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
584U3U|1|5+ 4U3U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
594U4R|1|5+ 4U4R|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
604U4R|1|1+ 4U4R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
615DC3|1|1+ 5DC3|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
625DC3|1|5+ 5DC3|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
635TGA|1|1+ 5TGA|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.32016-11-23
645DGF|1|1+ 5DGF|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.32016-12-14
655TGA|1|5+ 5TGA|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.32016-11-23
665DGF|1|5+ 5DGF|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.32016-12-14
675DGE|1|1+ 5DGE|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.452017-01-25
685DGE|1|5+ 5DGE|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.452017-01-25
695DGV|1|1+ 5DGV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.12016-12-14
705DAT|1|1+ 5DAT|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.152016-08-31
715DGV|1|5+ 5DGV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.12016-12-14
725DAT|1|5+ 5DAT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.152016-08-31

Release history

Release8.0
Date2017-04-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_67580.1NR_4.0_13062.18.0(50) 4U4Z|1|5+4U4Z|1|8, 4U4N|1|5+4U4N|1|8, 4U56|1|5+4U56|1|8, 5FCI|1|1+5FCI|1|4, 4U3M|1|1+4U3M|1|4, 4U4Q|1|5+4U4Q|1|8, 4U51|1|5+4U51|1|8, 4V7R|1|D1+4V7R|1|D3, 5I4L|1|1+5I4L|1|4, 4U3U|1|1+4U3U|1|4, 4U4Y|1|1+4U4Y|1|4, 4U55|1|1+4U55|1|4, 5APO|1|5+5APO|1|8, 4U50|1|1+4U50|1|4, 4U4O|1|1+4U4O|1|4, 4U6F|1|1+4U6F|1|4, 5FCJ|1|1+5FCJ|1|4, 4U3M|1|5+4U3M|1|8, 4U4R|1|5+4U4R|1|8, 4U52|1|5+4U52|1|8, 4V88|1|A1+4V88|1|A4, 5I4L|1|5+5I4L|1|8, 4U3U|1|5+4U3U|1|8, 4U4Y|1|5+4U4Y|1|8, 4U55|1|5+4U55|1|8, 5DC3|1|5+5DC3|1|8, 4U4Q|1|1+4U4Q|1|4, 4U51|1|1+4U51|1|4, 4U6F|1|5+4U6F|1|8, 5FCJ|1|5+5FCJ|1|8, 4U3N|1|5+4U3N|1|8, 4U4U|1|1+4U4U|1|4, 4U53|1|1+4U53|1|4, 5APN|1|5+5APN|1|8, 4U56|1|1+4U56|1|4, 4U53|1|5+4U53|1|8, 4U3N|1|1+4U3N|1|4, 3JCT|1|1+3JCT|1|2, 4U52|1|1+4U52|1|4, 5GAK|1|1+5GAK|1|4, 5FCI|1|5+5FCI|1|8, 4U50|1|5+4U50|1|8, 4U4Z|1|1+4U4Z|1|4, 4U4U|1|5+4U4U|1|8, 4U4R|1|1+4U4R|1|4, 5DC3|1|1+5DC3|1|4, 4V7R|1|B1+4V7R|1|B3, 4U4O|1|5+4U4O|1|8, 4V88|1|A5+4V88|1|A8, 4U4N|1|1+4U4N|1|4(22) 5DGF|1|1+5DGF|1|4, 5JUP|1|B+5JUP|1|C, 5DAT|1|1+5DAT|1|4, 5MC6|1|BQ+5MC6|1|BS, 5DGE|1|1+5DGE|1|4, 5TGA|1|1+5TGA|1|4, 5LYB|1|5+5LYB|1|8, 5H4P|1|1+5H4P|1|4, 5DGV|1|1+5DGV|1|4, 5TGM|1|1+5TGM|1|4, 5JUU|1|B+5JUU|1|C, 5DGE|1|5+5DGE|1|8, 5JUO|1|B+5JUO|1|C, 5TGM|1|5+5TGM|1|8, 5M1J|1|14+5M1J|1|44, 5DAT|1|5+5DAT|1|8, 5T62|1|A+5T62|1|C, 5LYB|1|1+5LYB|1|4, 5DGV|1|5+5DGV|1|8, 5DGF|1|5+5DGF|1|8, 5TGA|1|5+5TGA|1|8, 5JUT|1|B+5JUT|1|C(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
13JCT|1|1+3JCT|1|2Title: Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083058
24V7R|1|D1+4V7R|1|D3Title: Yeast 80S ribosome.X-RAY DIFFRACTION43206
34V7R|1|B1+4V7R|1|B3Title: Yeast 80S ribosome.X-RAY DIFFRACTION43206
45T62|1|A+5T62|1|CTitle: Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.33200
55H4P|1|1+5H4P|1|4Title: Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.073091
65GAK|1|1+5GAK|1|4Title: Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.883165
75MC6|1|BQ+5MC6|1|BSTitle: Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.83165
84U4O|1|1+4U4O|1|4Title: Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63149
95FCI|1|1+5FCI|1|4Title: Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43149
105FCJ|1|1+5FCJ|1|4Title: Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13149
115TGM|1|1+5TGM|1|4Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53149
125TGA|1|1+5TGA|1|4Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33151
134U50|1|1+4U50|1|4Title: Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
144U53|1|1+4U53|1|4Title: Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33149
155I4L|1|1+5I4L|1|4Title: Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
165LYB|1|1+5LYB|1|4Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253149
174V88|1|A1+4V88|1|A4Title: The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
184U4N|1|1+4U4N|1|4Title: Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
194U4Z|1|1+4U4Z|1|4Title: Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
204U55|1|1+4U55|1|4Title: Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
214U52|1|1+4U52|1|4Title: Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
224U6F|1|1+4U6F|1|4Title: Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
234U4Q|1|1+4U4Q|1|4Title: Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
244U4U|1|1+4U4U|1|4Title: Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
254U51|1|1+4U51|1|4Title: Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
264U56|1|1+4U56|1|4Title: Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453149
274U3N|1|1+4U3N|1|4Title: Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
284U4R|1|1+4U4R|1|4Title: Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83149
294U3U|1|1+4U3U|1|4Title: Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93149
304U3M|1|1+4U3M|1|4Title: Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
314U4Y|1|1+4U4Y|1|4Title: Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
325DC3|1|1+5DC3|1|4Title: Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253149
335DGE|1|1+5DGE|1|4Title: Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453149
345DGV|1|1+5DGV|1|4Title: Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13148
355DGF|1|1+5DGF|1|4Title: Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33149
365DAT|1|1+5DAT|1|4Title: Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153149
375M1J|1|14+5M1J|1|44Title: Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.33295
385APN|1|5+5APN|1|8Title: Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.913092
395DGF|1|5+5DGF|1|8Title: Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33169
405DAT|1|5+5DAT|1|8Title: Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153169
415DC3|1|5+5DC3|1|8Title: Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253169
425FCI|1|5+5FCI|1|8Title: Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43150
435FCJ|1|5+5FCJ|1|8Title: Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13150
444U4O|1|5+4U4O|1|8Title: Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63150
454U56|1|5+4U56|1|8Title: Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453150
464U51|1|5+4U51|1|8Title: Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
474U4U|1|5+4U4U|1|8Title: Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
484U4Q|1|5+4U4Q|1|8Title: Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
494U6F|1|5+4U6F|1|8Title: Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
504U3M|1|5+4U3M|1|8Title: Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
514U4Y|1|5+4U4Y|1|8Title: Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
524V88|1|A5+4V88|1|A8Title: The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
534U4R|1|5+4U4R|1|8Title: Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83150
544U3U|1|5+4U3U|1|8Title: Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93150
554U3N|1|5+4U3N|1|8Title: Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23151
564U4Z|1|5+4U4Z|1|8Title: Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
574U55|1|5+4U55|1|8Title: Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
584U4N|1|5+4U4N|1|8Title: Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
595LYB|1|5+5LYB|1|8Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253150
605I4L|1|5+5I4L|1|8Title: Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
615TGA|1|5+5TGA|1|8Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33152
624U53|1|5+4U53|1|8Title: Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33150
634U50|1|5+4U50|1|8Title: Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
644U52|1|5+4U52|1|8Title: Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
655DGV|1|5+5DGV|1|8Title: Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13149
665TGM|1|5+5TGM|1|8Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53150
675DGE|1|5+5DGE|1|8Title: Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453150
685APO|1|5+5APO|1|8Title: Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413092
695JUT|1|B+5JUT|1|CTitle: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY43309
705JUU|1|B+5JUU|1|CTitle: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY43307
715JUP|1|B+5JUP|1|CTitle: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.53309
725JUO|1|B+5JUO|1|CTitle: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY43309

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