Equivalence class NR_4.0_67011.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2PN4|1|C+ 2PN4|1|D (rep) | 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3', 5'-R(*GP*CP*GP*(5BU)P*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*(5BU)P*CP*CP*GP*G)-3' | Crystal Structure of Hepatitis C Virus IRES Subdomain IIa | X-ray diffraction | 2.32 | 2008-04-01 | ||||
| 2 | 2NOK|1|A+ 2NOK|1|B | 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3', 5'-R(*GP*CP*GP*UP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*UP*CP*CP*GP*G)-3' | Crystal Structure of an RNA domain from Hepatitis C virus. | X-ray diffraction | 3 | 2007-02-13 | ||||
| 3 | 2PN4|1|A+ 2PN4|1|B | 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3', 5'-R(*GP*CP*GP*(5BU)P*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*(5BU)P*CP*CP*GP*G)-3' | Crystal Structure of Hepatitis C Virus IRES Subdomain IIa | X-ray diffraction | 2.32 | 2008-04-01 | ||||
| 4 | 2PN3|1|A+ 2PN3|1|B | 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3', 5'-R(*GP*CP*GP*(5BU)P*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*(5BU)P*CP*CP*GP*G)-3' | Crystal Structure of Hepatitis C Virus IRES Subdomain IIa | X-ray diffraction | 2.9 | 2008-04-01 | ||||
| 5 | 2NOK|1|C+ 2NOK|1|D | 5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3', 5'-R(*GP*CP*GP*UP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*UP*CP*CP*GP*G)-3' | Crystal Structure of an RNA domain from Hepatitis C virus. | X-ray diffraction | 3 | 2007-02-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_67011.1 | NR_4.0_55928.1 | 6.0 | (2) 2PN4|1|A+2PN4|1|B, 2PN4|1|C+2PN4|1|D | (3) 2NOK|1|A+2NOK|1|B, 2PN3|1|A+2PN3|1|B, 2NOK|1|C+2NOK|1|D | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2PN4|1|A+2PN4|1|B | Title: Crystal Structure of Hepatitis C Virus IRES Subdomain IIa | X-RAY DIFFRACTION | 2.32 | 24 | ||
| 2 | 2PN4|1|C+2PN4|1|D | Title: Crystal Structure of Hepatitis C Virus IRES Subdomain IIa | X-RAY DIFFRACTION | 2.32 | 24 | ||
| 3 | 2PN3|1|A+2PN3|1|B | Title: Crystal Structure of Hepatitis C Virus IRES Subdomain IIa | X-RAY DIFFRACTION | 2.9 | 24 | ||
| 4 | 2NOK|1|A+2NOK|1|B | Title: Crystal Structure of an RNA domain from Hepatitis C virus. | X-RAY DIFFRACTION | 3 | 24 | ||
| 5 | 2NOK|1|C+2NOK|1|D | Title: Crystal Structure of an RNA domain from Hepatitis C virus. | X-RAY DIFFRACTION | 3 | 24 |
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