Equivalence class NR_4.0_66734.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5U0Q|1|C+ 5U0Q|1|D (rep) | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), DNA/RNA (5'-R(*GP*GP*AP*GP*C)-D(P*T)-R(P*A)-3') | synthetic construct | Synthetic | RNA-DNA heptamer duplex with one 2'-5'-linkage | X-ray diffraction | 1.43 | 2017-11-29 | ||
| 2 | 5U0Q|1|A+ 5U0Q|1|B | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), DNA/RNA (5'-R(*GP*GP*AP*GP*C)-D(P*T)-R(P*A)-3') | synthetic construct | Synthetic | RNA-DNA heptamer duplex with one 2'-5'-linkage | X-ray diffraction | 1.43 | 2017-11-29 | ||
| 3 | 5TKO|1|A+ 5TKO|1|B | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*AP*GP*CP*UP*A)-3') | unidentified | RNA heptamer duplex with one 2'-5'-linkage | X-ray diffraction | 1.52 | 2017-10-11 | |||
| 4 | 5TKO|1|C+ 5TKO|1|D | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*AP*GP*CP*UP*A)-3') | unidentified | RNA heptamer duplex with one 2'-5'-linkage | X-ray diffraction | 1.52 | 2017-10-11 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5U0Q|1|C+5U0Q|1|D | Title: RNA-DNA heptamer duplex with one 2'-5'-linkage | X-RAY DIFFRACTION | 1.43 | 7 | ||
| 2 | 5TKO|1|C+5TKO|1|D | Title: RNA heptamer duplex with one 2'-5'-linkage | X-RAY DIFFRACTION | 1.52 | 7 | ||
| 3 | 5TKO|1|A+5TKO|1|B | Title: RNA heptamer duplex with one 2'-5'-linkage | X-RAY DIFFRACTION | 1.52 | 7 | ||
| 4 | 5U0Q|1|A+5U0Q|1|B | Title: RNA-DNA heptamer duplex with one 2'-5'-linkage | X-RAY DIFFRACTION | 1.43 | 7 |
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