RNA 3D Hub //

Equivalence class NR_4.0_66310.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16D9J|1|2 (rep)Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.22018-06-06
25LZS|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
35LZV|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
46D90|1|2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.22018-06-06
55LZZ|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
65LZW|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
75LZT|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
85LZX|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
96HCJ|1|A2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsElectron microscopy3.82018-10-17
105LZU|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
116HCF|1|A1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonElectron microscopy3.92018-10-17
123JAH|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
135FLX|1|1Small subunit ribosomal RNA18S RRNAOryctolagus cuniculusEukaryaRF01960Mammalian 40S HCV-IRES complexElectron microscopy3.92015-12-23
145LZY|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Electron microscopy3.992016-11-30
153JAG|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
163JAI|1|9Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
173JAN|1|S2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
183JAJ|1|S2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05

Release history

Release9.16
Date2018-11-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_66310.4NR_4.0_66310.39.16(18) 5LZX|1|9, 3JAJ|1|S2, 5LZV|1|9, 6HCJ|1|A2, 3JAH|1|9, 5LZU|1|9, 6HCF|1|A1, 3JAG|1|9, 5LZT|1|9, 6D9J|1|2, 6D90|1|2, 5LZS|1|9, 5LZY|1|9, 3JAN|1|S2, 5LZW|1|9, 3JAI|1|9, 5LZZ|1|9, 5FLX|1|1(0) (4) 1VX2|1|2, 3J74|1|S2, 3J73|1|S2, 1VX5|1|2

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_66310.4NR_4.0_66310.59.17(18) 5LZZ|1|9, 6HCJ|1|A2, 3JAH|1|9, 5FLX|1|1, 5LZV|1|9, 5LZY|1|9, 6HCF|1|A1, 3JAG|1|9, 3JAN|1|S2, 5LZU|1|9, 6D9J|1|2, 3JAJ|1|S2, 5LZT|1|9, 5LZX|1|9, 6D90|1|2, 3JAI|1|9, 5LZS|1|9, 5LZW|1|9(0) (4) 6MTB|1|9, 6MTE|1|9, 6MTD|1|9, 6MTC|1|9

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
13JAJ|1|S2Title: Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
23JAN|1|S2Title: Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.751742
33JAH|1|9Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.451719
43JAG|1|9Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.651719
53JAI|1|9Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.651719
65LZS|1|9Title: Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.311697
75LZT|1|9Title: Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.651698
85LZV|1|9Title: Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.351698
95LZU|1|9Title: Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.751698
105LZW|1|9Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.531698
115LZX|1|9Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.671698
125LZZ|1|9Title: Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.471698
135LZY|1|9Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.991698
146D90|1|2Title: Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.21697
156HCF|1|A1Title: Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.91732
166HCJ|1|A2Title: Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.81740
175FLX|1|1Title: Mammalian 40S HCV-IRES complexELECTRON MICROSCOPY3.91708
186D9J|1|2Title: Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.21697

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0872 s