NR_4.0_63819.1

Members (13)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4WF9\|1\|X (rep)	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin	X-ray diffraction	3.43	2015-10-21
2	4WFA\|1\|X	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid	X-ray diffraction	3.39	2015-10-21
3	4WCE\|1\|X	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus	X-ray diffraction	3.53	2015-10-21
4	4WFB\|1\|X	Large subunit ribosomal RNA	23S rRNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205	X-ray diffraction	3.43	2015-10-21
5	5NRG\|1\|X	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02	X-ray diffraction	3.44	2017-08-09
6	5HL7\|1\|X	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin	X-ray diffraction	3.55	2016-12-21
7	5HKV\|1\|X	Large subunit ribosomal RNA	23s ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin	X-ray diffraction	3.66	2017-05-03
8	5NGM\|1\|AA	Large subunit ribosomal RNA	23S Ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	2.9S structure of the 70S ribosome composing the S. aureus 100S complex	Electron microscopy	2.9	2017-10-04
9	5T7V\|1\|B	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)	Electron microscopy	3.6	2017-05-31
10	5ND8\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Hibernating ribosome from Staphylococcus aureus (Unrotated state)	Electron microscopy	3.7	2017-06-28
11	5ND9\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	Hibernating ribosome from Staphylococcus aureus (Rotated state)	Electron microscopy	3.7	2017-06-28
12	5LI0\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Staphylococcus aureus	Bacteria	RF02541	70S ribosome from Staphylococcus aureus	Electron microscopy	3.8	2016-12-28
13	5TCU\|1\|B	Large subunit ribosomal RNA	23S RRNA	Staphylococcus aureus	Bacteria	RF02541	Methicillin sensitive Staphylococcus aureus 70S ribosome	Electron microscopy	3.9	2017-05-24

Release history

Release	9.11
Date	2018-01-28

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_63819.1	NR_4.0_63819.2	9.12	(13) 4WCE\|1\|X, 5T7V\|1\|B, 5NRG\|1\|X, 5NGM\|1\|AA, 5ND9\|1\|A, 5ND8\|1\|A, 5LI0\|1\|A, 5HL7\|1\|X, 5HKV\|1\|X, 4WFB\|1\|X, 4WFA\|1\|X, 4WF9\|1\|X, 5TCU\|1\|B	(0)	(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5NGM\|1\|AA	Title: 2.9S structure of the 70S ribosome composing the S. aureus 100S complex	ELECTRON MICROSCOPY	2.9	2905
2	5NRG\|1\|X	Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02	X-RAY DIFFRACTION	3.44	2711
3	5HKV\|1\|X	Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin	X-RAY DIFFRACTION	3.66	2695
4	5HL7\|1\|X	Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin	X-RAY DIFFRACTION	3.55	2705
5	4WCE\|1\|X	Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus	X-RAY DIFFRACTION	3.53	2708
6	4WFA\|1\|X	Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid	X-RAY DIFFRACTION	3.39	2711
7	4WFB\|1\|X	Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205	X-RAY DIFFRACTION	3.43	2707
8	4WF9\|1\|X	Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin	X-RAY DIFFRACTION	3.43	2712
9	5LI0\|1\|A	Title: 70S ribosome from Staphylococcus aureus	ELECTRON MICROSCOPY	3.8	2914
10	5ND8\|1\|A	Title: Hibernating ribosome from Staphylococcus aureus (Unrotated state)	ELECTRON MICROSCOPY	3.7	2912
11	5ND9\|1\|A	Title: Hibernating ribosome from Staphylococcus aureus (Rotated state)	ELECTRON MICROSCOPY	3.7	2914
12	5TCU\|1\|B	Title: Methicillin sensitive Staphylococcus aureus 70S ribosome	ELECTRON MICROSCOPY	3.9	2755
13	5T7V\|1\|B	Title: Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)	ELECTRON MICROSCOPY	3.6	2768

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_63819.1 Obsolete

Release history

Parents

Children