Equivalence class NR_4.0_63343.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5AY3|1|A+ 5AY3|1|B (rep) | RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*A*CP*UP*CP*C)-3') | synthetic construct | Synthetic | Crystal structure of RNA duplex containing C-C base pairs | X-ray diffraction | 1.2 | 2015-10-21 | ||
| 2 | 5AY2|1|A+ 5AY2|1|B | RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3') | synthetic construct | Synthetic | Crystal structure of RNA duplex containing C-Ag(I)-C base pairs | X-ray diffraction | 1.3 | 2015-10-21 | ||
| 3 | 5AY4|1|A+ 5AY4|1|B | RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3') | synthetic construct | Synthetic | Crystal structure of RNA duplex containing C-C base pairs obtained in the presence of Hg(II) | X-ray diffraction | 1.7 | 2015-10-21 | ||
| 4 | 5AY2|1|C+ 5AY2|1|D | RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3') | synthetic construct | Synthetic | Crystal structure of RNA duplex containing C-Ag(I)-C base pairs | X-ray diffraction | 1.3 | 2015-10-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_63343.1 | NR_4.0_51642.1 | 6.0 | (1) 5AY3|1|A+5AY3|1|B | (3) 5AY2|1|A+5AY2|1|B, 5AY2|1|C+5AY2|1|D, 5AY4|1|A+5AY4|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5AY4|1|A+5AY4|1|B | Title: Crystal structure of RNA duplex containing C-C base pairs obtained in the presence of Hg(II) | X-RAY DIFFRACTION | 1.7 | 11 | ||
| 2 | 5AY3|1|A+5AY3|1|B | Title: Crystal structure of RNA duplex containing C-C base pairs | X-RAY DIFFRACTION | 1.2 | 12 | ||
| 3 | 5AY2|1|A+5AY2|1|B | Title: Crystal structure of RNA duplex containing C-Ag(I)-C base pairs | X-RAY DIFFRACTION | 1.3 | 11 | ||
| 4 | 5AY2|1|C+5AY2|1|D | Title: Crystal structure of RNA duplex containing C-Ag(I)-C base pairs | X-RAY DIFFRACTION | 1.3 | 11 |
Coloring options: