Equivalence class NR_4.0_61828.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5EBI|1|F (rep) | DNA/RNA (5'-D(*C)-R(P*G)-D(P*C)-R(P*G)-D(P*C)-R(P*G)-3') | synthetic construct | Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-ray diffraction | 1.09 | 2016-02-10 | |||
| 2 | 5EBI|1|A | DNA/RNA (5'-D(*C)-R(P*G)-D(P*C)-R(P*G)-D(P*C)-R(P*G)-3') | synthetic construct | Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-ray diffraction | 1.09 | 2016-02-10 | |||
| 3 | 5EBI|1|H | DNA/RNA (5'-D(*C)-R(P*G)-D(P*C)-R(P*G)-D(P*C)-R(P*G)-3') | synthetic construct | Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-ray diffraction | 1.09 | 2016-02-10 | |||
| 4 | 5EBI|1|B | DNA/RNA (5'-D(*C)-R(P*G)-D(P*C)-R(P*G)-D(P*C)-R(P*G)-3') | synthetic construct | Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-ray diffraction | 1.09 | 2016-02-10 | |||
| 5 | 5EBI|1|D | DNA/RNA (5'-D(*C)-R(P*G)-D(P*C)-R(P*G)-D(P*C)-R(P*G)-3') | synthetic construct | Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-ray diffraction | 1.09 | 2016-02-10 | |||
| 6 | 5EBI|1|C | DNA/RNA (5'-D(*C)-R(P*G)-D(P*C)-R(P*G)-D(P*C)-R(P*G)-3') | synthetic construct | Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-ray diffraction | 1.09 | 2016-02-10 | |||
| 7 | 5EBI|1|E | DNA/RNA (5'-D(*C)-R(P*G)-D(P*C)-R(P*G)-D(P*C)-R(P*G)-3') | synthetic construct | Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-ray diffraction | 1.09 | 2016-02-10 | |||
| 8 | 5EBI|1|G | DNA/RNA (5'-D(*C)-R(P*G)-D(P*C)-R(P*G)-D(P*C)-R(P*G)-3') | synthetic construct | Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-ray diffraction | 1.09 | 2016-02-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_61828.1 | NR_4.0_13688.1 | 9.16 | (1) 5EBI|1|A | (7) 5EBI|1|D, 5EBI|1|F, 5EBI|1|H, 5EBI|1|C, 5EBI|1|E, 5EBI|1|G, 5EBI|1|B | (0) |
| NR_4.0_61828.1 | NR_4.0_28385.1 | 9.16 | (1) 5EBI|1|C | (7) 5EBI|1|D, 5EBI|1|F, 5EBI|1|H, 5EBI|1|B, 5EBI|1|E, 5EBI|1|G, 5EBI|1|A | (0) |
| NR_4.0_61828.1 | NR_4.0_50919.1 | 9.16 | (1) 5EBI|1|F | (7) 5EBI|1|E, 5EBI|1|H, 5EBI|1|B, 5EBI|1|D, 5EBI|1|G, 5EBI|1|A, 5EBI|1|C | (0) |
| NR_4.0_61828.1 | NR_4.0_55972.1 | 9.16 | (1) 5EBI|1|H | (7) 5EBI|1|E, 5EBI|1|G, 5EBI|1|B, 5EBI|1|D, 5EBI|1|F, 5EBI|1|A, 5EBI|1|C | (0) |
| NR_4.0_61828.1 | NR_4.0_98943.1 | 9.16 | (4) 5EBI|1|G, 5EBI|1|D, 5EBI|1|E, 5EBI|1|B | (4) 5EBI|1|C, 5EBI|1|F, 5EBI|1|H, 5EBI|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5EBI|1|E | Title: Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-RAY DIFFRACTION | 1.09 | 3 | ||
| 2 | 5EBI|1|G | Title: Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-RAY DIFFRACTION | 1.09 | 3 | ||
| 3 | 5EBI|1|C | Title: Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-RAY DIFFRACTION | 1.09 | 4 | ||
| 4 | 5EBI|1|A | Title: Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-RAY DIFFRACTION | 1.09 | 4 | ||
| 5 | 5EBI|1|B | Title: Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-RAY DIFFRACTION | 1.09 | 3 | ||
| 6 | 5EBI|1|H | Title: Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-RAY DIFFRACTION | 1.09 | 5 | ||
| 7 | 5EBI|1|F | Title: Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-RAY DIFFRACTION | 1.09 | 5 | ||
| 8 | 5EBI|1|D | Title: Crystal structure of a DNA-RNA chimera in complex with Ba2+ ions: a case of unusual multi-domain twinning | X-RAY DIFFRACTION | 1.09 | 3 |
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