Equivalence class NR_4.0_61331.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6D30|1|C (rep) | RNA (5'-R(UP*U)-3') | synthetic construct | Synthetic | Structure of human Usb1 with uridine-uridine, inactive H208Q mutant | X-ray diffraction | 1.17 | 2018-09-05 | ||
| 2 | 3ER9|1|D | 5'-R(UP*U)-3' | Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP | X-ray diffraction | 2.06 | 2009-06-16 | ||||
| 3 | 5KAL|1|Y | RNA (5'-R(*UP*U)-3') | Trypanosoma brucei | Eukarya | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-ray diffraction | 2.75 | 2016-10-26 | ||
| 4 | 4NIA|1|3 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 5 | 5KAL|1|Z | RNA (5'-R(*UP*U)-3') | Trypanosoma brucei | Eukarya | Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-ray diffraction | 2.75 | 2016-10-26 | ||
| 6 | 4NIA|1|7 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 7 | 4NIA|1|4 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 8 | 5NEW|1|C | RNA (5'-R(P*UP*U)-3') | Escherichia coli | Bacteria | RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer | X-ray diffraction | 2.51 | 2017-10-04 | ||
| 9 | 4NIA|1|v | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 10 | 4NIA|1|u | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 11 | 4NIA|1|6 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 12 | 4OQ9|1|7 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 13 | 4NIA|1|x | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 14 | 4NIA|1|1 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 15 | 4OQ9|1|4 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 16 | 4NIA|1|8 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 17 | 4OQ9|1|8 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 18 | 4OQ9|1|t | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 19 | 4OQ9|1|y | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 20 | 4NIA|1|5 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 21 | 4OQ9|1|x | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 22 | 2VRT|1|E | 5'-R(*UP*UP)-3' | Escherichia coli | Bacteria | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-ray diffraction | 3.5 | 2008-07-22 | ||
| 23 | 4NIA|1|w | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 24 | 4NIA|1|t | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 25 | 4OQ9|1|6 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 26 | 4OQ8|1|D | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 27 | 4NIA|1|z | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 28 | 4OQ9|1|w | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 29 | 4OQ9|1|5 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 30 | 4NIA|1|y | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 31 | 4NIA|1|2 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 32 | 2VRT|1|F | 5'-R(*UP*UP)-3' | Escherichia coli | Bacteria | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-ray diffraction | 3.5 | 2008-07-22 | ||
| 33 | 4OQ9|1|u | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 34 | 4OQ9|1|z | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 35 | 4OQ9|1|2 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 36 | 4OQ9|1|v | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 37 | 4OQ9|1|3 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 38 | 1DDL|1|E | RNA (5'-R(P*UP*U)-3') | DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-ray diffraction | 2.7 | 2000-10-30 | ||||
| 39 | 4OQ9|1|1 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_61331.4 | NR_4.0_61331.3 | 9.15 | (38) 4NIA|1|1, 5KAL|1|Z, 3ER9|1|D, 5KAL|1|Y, 2VRT|1|F, 4OQ9|1|z, 2VRT|1|E, 4OQ9|1|y, 1DDL|1|E, 4OQ9|1|x, 4OQ9|1|w, 4OQ9|1|v, 4OQ9|1|u, 4OQ9|1|t, 4OQ9|1|8, 4OQ9|1|7, 4OQ9|1|6, 4OQ9|1|5, 4OQ9|1|4, 4OQ9|1|3, 4OQ9|1|2, 4OQ9|1|1, 4OQ8|1|D, 4NIA|1|z, 4NIA|1|y, 4NIA|1|x, 4NIA|1|w, 4NIA|1|v, 4NIA|1|u, 4NIA|1|t, 4NIA|1|8, 4NIA|1|7, 4NIA|1|6, 4NIA|1|5, 4NIA|1|4, 4NIA|1|3, 4NIA|1|2, 5NEW|1|C | (1) 6D30|1|C | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1DDL|1|E | Title: DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-RAY DIFFRACTION | 2.7 | 2 | ||
| 2 | 4NIA|1|7 | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 3 | 4NIA|1|8 | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 4 | 4NIA|1|y | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 5 | 4OQ9|1|8 | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 6 | 4NIA|1|u | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 7 | 4OQ9|1|7 | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 8 | 4OQ9|1|y | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 9 | 4OQ9|1|z | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 10 | 4OQ9|1|4 | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 11 | 4NIA|1|z | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 12 | 4NIA|1|4 | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 13 | 4NIA|1|1 | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 14 | 4OQ9|1|5 | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 15 | 4OQ9|1|1 | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 16 | 2VRT|1|E | Title: Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2 | ||
| 17 | 2VRT|1|F | Title: Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2 | ||
| 18 | 4NIA|1|5 | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 19 | 4NIA|1|6 | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 20 | 4OQ9|1|6 | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 21 | 3ER9|1|D | Title: Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP | X-RAY DIFFRACTION | 2.06 | 2 | ||
| 22 | 4OQ9|1|u | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 23 | 4NIA|1|2 | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 24 | 4OQ9|1|2 | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 25 | 6D30|1|C | Title: Structure of human Usb1 with uridine-uridine, inactive H208Q mutant | X-RAY DIFFRACTION | 1.17 | 2 | ||
| 26 | 4OQ8|1|D | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 27 | 4OQ9|1|w | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 28 | 4NIA|1|x | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 29 | 4OQ9|1|t | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 30 | 4NIA|1|3 | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 31 | 4NIA|1|v | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 32 | 5NEW|1|C | Title: RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer | X-RAY DIFFRACTION | 2.51 | 2 | ||
| 33 | 4OQ9|1|v | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 34 | 5KAL|1|Z | Title: Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-RAY DIFFRACTION | 2.75 | 2 | ||
| 35 | 5KAL|1|Y | Title: Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpU | X-RAY DIFFRACTION | 2.75 | 2 | ||
| 36 | 4OQ9|1|x | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 37 | 4OQ9|1|3 | Title: Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 | ||
| 38 | 4NIA|1|t | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 | ||
| 39 | 4NIA|1|w | Title: Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
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