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Equivalence class NR_4.0_59140.4 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16BK8|1|5 (rep)U5 spliceosomal RNAU5 snRNA, RNA (34-MER)Saccharomyces cerevisiaeEukaryaRF00020S. cerevisiae spliceosomal post-catalytic P complexElectron microscopy3.32018-02-21
25GMK|1|DU5 spliceosomal RNAU5 snRNA, 5'-ExonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionElectron microscopy3.42016-08-17
35GM6|1|DU5 spliceosomal RNASaccharomyces cerevisiae strain CDRDR_sf_H chromosome VII sequence, Pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolutionElectron microscopy3.52016-09-21
45Y88|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromElectron microscopy3.462018-08-01
56EXN|1|5U5 spliceosomal RNAU5 snRNA, Ligated exons: UBC4 mRNASaccharomyces cerevisiaeEukaryaRF00020Post-catalytic P complex spliceosome with 3' splice site dockedElectron microscopy3.72018-01-17
65YLZ|1|BU5 spliceosomal RNAU5 snRNA, mRNA/intron lariat, U2 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromElectron microscopy3.62018-07-18
75LJ3|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82016-08-03
85ZWM|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)Electron microscopy3.42018-08-29
95GAN|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromElectron microscopy3.72016-01-27
105MPS|1|5U5 spliceosomal RNAU5 snRNA, UBC4 gene exonSaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy3.852017-01-18
115WSG|1|DU5 spliceosomal RNAU5 snRNA, 5'-exonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionElectron microscopy42017-01-25
125GAM|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNPElectron microscopy3.72016-02-03
135GAP|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Body region of the U4/U6.U5 tri-snRNPElectron microscopy3.62016-01-27
145ZWO|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstromElectron microscopy3.92018-08-29
153JCM|1|FU5 spliceosomal RNASNR7-L snRNA, SNR6 snRNA, pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPElectron microscopy3.82016-02-24

Release history

Release9.159.169.179.189.199.209.219.229.239.24
Date2018-11-092018-11-162018-11-232018-11-302018-12-052018-12-122018-12-192018-12-262019-01-022019-01-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_59140.4NR_4.0_59140.39.15(11) 5LJ3|1|U, 5GMK|1|D, 5GM6|1|D, 5GAP|1|U, 5GAN|1|U, 6EXN|1|5, 5GAM|1|U, 6BK8|1|5, 3JCM|1|F, 5WSG|1|D, 5MPS|1|5(4) 5Y88|1|B, 5ZWO|1|B, 5ZWM|1|B, 5YLZ|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
15MPS|1|5Title: Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.85141
25LJ3|1|UTitle: Structure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8141
35GM6|1|DTitle: Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolutionELECTRON MICROSCOPY3.5117
45Y88|1|BTitle: Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromELECTRON MICROSCOPY3.46117
55GMK|1|DTitle: Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4117
65WSG|1|DTitle: Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY4117
75YLZ|1|BTitle: Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromELECTRON MICROSCOPY3.6117
86BK8|1|5Title: S. cerevisiae spliceosomal post-catalytic P complexELECTRON MICROSCOPY3.3103
96EXN|1|5Title: Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.7171
105GAP|1|UTitle: Body region of the U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.620
115GAN|1|UTitle: The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromELECTRON MICROSCOPY3.7141
125GAM|1|UTitle: Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.7141
133JCM|1|FTitle: Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.8113
145ZWM|1|BTitle: Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)ELECTRON MICROSCOPY3.4175
155ZWO|1|BTitle: Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstromELECTRON MICROSCOPY3.9175

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