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Equivalence class NR_4.0_59140.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15GMK|1|D (rep)U5 spliceosomal RNAU5 snRNA, 5'-ExonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionElectron microscopy3.42016-08-17
25GM6|1|DU5 spliceosomal RNASaccharomyces cerevisiae strain CDRDR_sf_H chromosome VII sequence, Pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolutionElectron microscopy3.52016-09-21
35LJ3|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82016-08-03
45GAN|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromElectron microscopy3.72016-01-27
55MPS|1|5U5 spliceosomal RNAU5 snRNA, UBC4 gene exonSaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy3.852017-01-18
65GAM|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNPElectron microscopy3.72016-02-03
75WSG|1|DU5 spliceosomal RNAU5 snRNA, 5'-exonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionElectron microscopy42017-01-25
83JCM|1|FU5 spliceosomal RNASNR7-L snRNA, SNR6 snRNA, pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPElectron microscopy3.82016-02-24
95GAP|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Body region of the U4/U6.U5 tri-snRNPElectron microscopy3.62016-01-27

Release history

Release9.11
Date2018-01-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_59140.2NR_4.0_59140.39.12(9) 5GAN|1|U, 5GAM|1|U, 3JCM|1|F, 5WSG|1|D, 5MPS|1|5, 5LJ3|1|U, 5GMK|1|D, 5GM6|1|D, 5GAP|1|U(0) (2) 6EXN|1|5, 6BK8|1|5

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
15MPS|1|5Title: Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.85141
25LJ3|1|UTitle: Structure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8141
35WSG|1|DTitle: Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY4117
45GMK|1|DTitle: Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4117
55GM6|1|DTitle: Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolutionELECTRON MICROSCOPY3.5117
65GAP|1|UTitle: Body region of the U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.620
75GAN|1|UTitle: The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromELECTRON MICROSCOPY3.7141
85GAM|1|UTitle: Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.7141
93JCM|1|FTitle: Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.8113

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