Equivalence class NR_4.0_59140.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5GMK|1|D (rep) | U5 spliceosomal RNA | U5 snRNA, 5'-Exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | Electron microscopy | 3.4 | 2016-08-17 |
| 2 | 5GM6|1|D | U5 spliceosomal RNA | Saccharomyces cerevisiae strain CDRDR_sf_H chromosome VII sequence, Pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution | Electron microscopy | 3.5 | 2016-09-21 |
| 3 | 5LJ3|1|U | U5 spliceosomal RNA | U5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 2016-08-03 |
| 4 | 5GAN|1|U | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom | Electron microscopy | 3.7 | 2016-01-27 |
| 5 | 5MPS|1|5 | U5 spliceosomal RNA | U5 snRNA, UBC4 gene exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 3.85 | 2017-01-18 |
| 6 | 5GAM|1|U | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | Electron microscopy | 3.7 | 2016-02-03 |
| 7 | 5WSG|1|D | U5 spliceosomal RNA | U5 snRNA, 5'-exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | Electron microscopy | 4 | 2017-01-25 |
| 8 | 3JCM|1|F | U5 spliceosomal RNA | SNR7-L snRNA, SNR6 snRNA, pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | Electron microscopy | 3.8 | 2016-02-24 |
| 9 | 5GAP|1|U | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Body region of the U4/U6.U5 tri-snRNP | Electron microscopy | 3.6 | 2016-01-27 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_59140.1 | NR_4.0_57293.3 | 8.0 | (3) 5GAP|1|U, 5GAN|1|U, 5GAM|1|U | (6) 5WSG|1|D, 5MPS|1|5, 5LJ3|1|U, 5GMK|1|D, 5GM6|1|D, 3JCM|1|F | (0) |
| NR_4.0_59140.1 | NR_4.0_99653.1 | 8.0 | (1) 3JCM|1|F | (8) 5WSG|1|D, 5MPS|1|5, 5LJ3|1|U, 5GMK|1|D, 5GM6|1|D, 5GAP|1|U, 5GAN|1|U, 5GAM|1|U | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3JCM|1|F | Title: Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.8 | 113 | ||
| 2 | 5GAM|1|U | Title: Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.7 | 141 | ||
| 3 | 5GAN|1|U | Title: The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom | ELECTRON MICROSCOPY | 3.7 | 141 | ||
| 4 | 5GAP|1|U | Title: Body region of the U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.6 | 20 | ||
| 5 | 5GM6|1|D | Title: Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution | ELECTRON MICROSCOPY | 3.5 | 117 | ||
| 6 | 5GMK|1|D | Title: Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | ELECTRON MICROSCOPY | 3.4 | 117 | ||
| 7 | 5WSG|1|D | Title: Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | ELECTRON MICROSCOPY | 4 | 117 | ||
| 8 | 5LJ3|1|U | Title: Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 141 | ||
| 9 | 5MPS|1|5 | Title: Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 3.85 | 141 |
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