Equivalence class NR_4.0_57940.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5E81|1|4K (rep) | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-ray diffraction | 2.95 | 2016-01-27 | ||
| 2 | 5EL7|1|4K | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-ray diffraction | 3.15 | 2016-01-27 | ||
| 3 | 5EL6|1|4K | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-ray diffraction | 3.1 | 2016-01-27 | ||
| 4 | 5EL4|1|4K | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-ray diffraction | 3.15 | 2016-01-27 | ||
| 5 | 5EL5|1|4K | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-ray diffraction | 3.15 | 2016-01-27 | ||
| 6 | 5E7K|1|4K | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-ray diffraction | 3.2 | 2016-01-27 | ||
| 7 | 5EL7|1|4L | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-ray diffraction | 3.15 | 2016-01-27 | ||
| 8 | 5E81|1|4L | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-ray diffraction | 2.95 | 2016-01-27 | ||
| 9 | 5EL6|1|4L | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-ray diffraction | 3.1 | 2016-01-27 | ||
| 10 | 5E7K|1|4L | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-ray diffraction | 3.2 | 2016-01-27 | ||
| 11 | 5EL5|1|4L | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-ray diffraction | 3.15 | 2016-01-27 | ||
| 12 | 5EL4|1|4L | mRNA | Escherichia coli | Bacteria | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-ray diffraction | 3.15 | 2016-01-27 | ||
| 13 | 5D8B|1|GD | mRNA | synthetic construct | Synthetic | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-ray diffraction | 3.63 | 2015-10-14 | ||
| 14 | 5D8B|1|HD | mRNA | synthetic construct | Synthetic | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-ray diffraction | 3.63 | 2015-10-14 | ||
| 15 | 4V89|1|AV | messenger RNA | synthetic construct | Synthetic | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin) | X-ray diffraction | 3.7 | 2014-07-09 | ||
| 16 | 4V85|1|AV | messenger RNA | synthetic construct | Synthetic | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-ray diffraction | 3.2 | 2014-07-09 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_57940.1 | NR_all_13242.1 | 4.0 | (2) 5D8B|1|GD, 5D8B|1|HD | (14) 5E81|1|4K, 5E7K|1|4L, 5E7K|1|4K, 4V89|1|AV, 4V85|1|AV, 5EL7|1|4L, 5EL7|1|4K, 5EL6|1|4L, 5EL6|1|4K, 5EL5|1|4L, 5EL5|1|4K, 5EL4|1|4L, 5EL4|1|4K, 5E81|1|4L | (0) |
| NR_4.0_57940.1 | NR_all_32513.1 | 4.0 | (2) 5EL5|1|4K, 5EL6|1|4K | (14) 5EL4|1|4K, 5E81|1|4L, 5E81|1|4K, 5E7K|1|4L, 5E7K|1|4K, 5D8B|1|HD, 5D8B|1|GD, 4V89|1|AV, 4V85|1|AV, 5EL7|1|4L, 5EL7|1|4K, 5EL6|1|4L, 5EL5|1|4L, 5EL4|1|4L | (0) |
| NR_4.0_57940.1 | NR_all_59428.1 | 4.0 | (10) 5EL6|1|4L, 5E81|1|4K, 5E7K|1|4L, 5EL5|1|4L, 5E7K|1|4K, 5EL4|1|4L, 5EL4|1|4K, 5EL7|1|4L, 5E81|1|4L, 5EL7|1|4K | (6) 5D8B|1|GD, 4V85|1|AV, 4V89|1|AV, 5EL6|1|4K, 5EL5|1|4K, 5D8B|1|HD | (0) |
| NR_4.0_57940.1 | NR_all_94845.1 | 4.0 | (2) 4V89|1|AV, 4V85|1|AV | (14) 5E7K|1|4K, 5D8B|1|HD, 5D8B|1|GD, 5EL7|1|4L, 5EL7|1|4K, 5EL6|1|4L, 5EL6|1|4K, 5EL5|1|4L, 5EL5|1|4K, 5EL4|1|4L, 5EL4|1|4K, 5E81|1|4L, 5E81|1|4K, 5E7K|1|4L | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5D8B|1|GD | Title: Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-RAY DIFFRACTION | 3.63 | 8 | ||
| 2 | 5D8B|1|HD | Title: Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | X-RAY DIFFRACTION | 3.63 | 8 | ||
| 3 | 5EL7|1|4L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.15 | 19 | ||
| 4 | 5EL5|1|4L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-RAY DIFFRACTION | 3.15 | 17 | ||
| 5 | 5E81|1|4L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 19 | ||
| 6 | 5EL4|1|4L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-RAY DIFFRACTION | 3.15 | 17 | ||
| 7 | 5EL6|1|4L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.1 | 18 | ||
| 8 | 5E7K|1|4L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-RAY DIFFRACTION | 3.2 | 18 | ||
| 9 | 5E81|1|4K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 21 | ||
| 10 | 5EL7|1|4K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.15 | 20 | ||
| 11 | 5EL4|1|4K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-RAY DIFFRACTION | 3.15 | 20 | ||
| 12 | 5E7K|1|4K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-RAY DIFFRACTION | 3.2 | 19 | ||
| 13 | 5EL5|1|4K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position | X-RAY DIFFRACTION | 3.15 | 20 | ||
| 14 | 5EL6|1|4K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.1 | 20 | ||
| 15 | 4V89|1|AV | Title: Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin) | X-RAY DIFFRACTION | 3.7 | 6 | ||
| 16 | 4V85|1|AV | Title: Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-RAY DIFFRACTION | 3.2 | 6 |
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