Equivalence class NR_4.0_54414.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1XMO|1|X+ 1XMO|1|W (rep) | Anticodon Transfer RNA, A-Site Messenger RNA | Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center | X-ray diffraction | 3.25 | 2004-12-14 | ||||
| 2 | 3T1Y|1|X+ 3T1Y|1|W | tRNA ASL human Lys3, mRNA A-site fragment | Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin | X-ray diffraction | 2.8 | 2012-01-25 | ||||
| 3 | 1XMQ|1|X+ 1XMQ|1|W | Anticodon RNA, A-Site Messenger RNA | Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center | X-ray diffraction | 3 | 2004-12-14 | ||||
| 4 | 3T1H|1|X+ 3T1H|1|W | tRNA ASL human Lys3, mRNA A-site fragment | Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin | X-ray diffraction | 3.11 | 2012-01-25 | ||||
| 5 | 4X66|1|b+ 4X66|1|a | RNA (5'-D(P*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*(PSU)P*C)-3'), RNA (5'-D(*AP*AP*(MA6)P*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-ray diffraction | 3.45 | 2015-11-18 | ||
| 6 | 4X64|1|b+ 4X64|1|a | RNA (5'-D(P*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*(PSU)P*C)-3'), RNA (5'-D(*(MA6)P*AP*AP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-ray diffraction | 3.35 | 2015-11-18 | ||
| 7 | 4X65|1|b+ 4X65|1|a | RNA (5'-D(P*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*(PSU)P*C)-3'), RNA (5'-D(*AP*(MA6)P*AP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-ray diffraction | 3.35 | 2015-11-18 | ||
| 8 | 4X62|1|b+ 4X62|1|a | RNA (5'-D(P*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*(PSU)P*C)-3'), RNA (5'-D(*AP*AP*AP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-ray diffraction | 3.45 | 2015-11-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_54414.1 | NR_4.0_81904.1 | 6.0 | (1) 1XMO|1|X+1XMO|1|W | (7) 1XMQ|1|X+1XMQ|1|W, 3T1H|1|X+3T1H|1|W, 3T1Y|1|X+3T1Y|1|W, 4X62|1|b+4X62|1|a, 4X64|1|b+4X64|1|a, 4X65|1|b+4X65|1|a, 4X66|1|b+4X66|1|a | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4X62|1|b+4X62|1|a | Title: Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-RAY DIFFRACTION | 3.45 | 8 | ||
| 2 | 4X66|1|b+4X66|1|a | Title: Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-RAY DIFFRACTION | 3.45 | 8 | ||
| 3 | 4X64|1|b+4X64|1|a | Title: Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-RAY DIFFRACTION | 3.35 | 8 | ||
| 4 | 4X65|1|b+4X65|1|a | Title: Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-RAY DIFFRACTION | 3.35 | 8 | ||
| 5 | 3T1H|1|X+3T1H|1|W | Title: Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin | X-RAY DIFFRACTION | 3.11 | 8 | ||
| 6 | 3T1Y|1|X+3T1Y|1|W | Title: Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin | X-RAY DIFFRACTION | 2.8 | 8 | ||
| 7 | 1XMO|1|X+1XMO|1|W | Title: Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center | X-RAY DIFFRACTION | 3.25 | 9 | ||
| 8 | 1XMQ|1|X+1XMQ|1|W | Title: Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center | X-RAY DIFFRACTION | 3 | 10 |
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