Equivalence class NR_4.0_53813.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3SYW|1|A+ 3SYW|1|B (rep) | RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3') | Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-ray diffraction | 1.57 | 2012-04-25 | ||||
| 2 | 3SJ2|1|A+ 3SJ2|1|B | RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*GP*GP*CP*GP*GP*CP*GP*GP*GP*UP*CP*C)-3'), RNA (5'-R(P*GP*GP*GP*CP*CP*GP*GP*CP*GP*GP*CP*GP*GP*GP*UP*CP*C)-3') | A Crystal Structure of a Model of the Repeating r(CGG) Transcript Found in Fragile X Syndrome | X-ray diffraction | 1.36 | 2011-08-03 | ||||
| 3 | 4J50|1|A+ 4J50|1|B | RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3') | synthetic construct | Synthetic | Crystal Structure of an Expanded RNA CAG Repeat | X-ray diffraction | 1.65 | 2013-02-20 | ||
| 4 | 4YN6|1|A+ 4YN6|1|B | RNA (5'-R(P*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3') | synthetic construct | Synthetic | Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs) | X-ray diffraction | 2.3 | 2015-04-22 | ||
| 5 | 3SZX|1|A+ 3SZX|1|B | RNA (5'-R(P*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3') | Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-ray diffraction | 2.2 | 2012-04-25 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_53813.1 | NR_all_44819.1 | 4.0 | (3) 4YN6|1|A+4YN6|1|B, 4J50|1|A+4J50|1|B, 3SYW|1|A+3SYW|1|B | (2) 3SZX|1|A+3SZX|1|B, 3SJ2|1|A+3SJ2|1|B | (0) |
| NR_4.0_53813.1 | NR_all_79871.1 | 4.0 | (1) 3SJ2|1|A+3SJ2|1|B | (4) 3SYW|1|A+3SYW|1|B, 4YN6|1|A+4YN6|1|B, 4J50|1|A+4J50|1|B, 3SZX|1|A+3SZX|1|B | (0) |
| NR_4.0_53813.1 | NR_all_90925.1 | 4.0 | (1) 3SZX|1|A+3SZX|1|B | (4) 4YN6|1|A+4YN6|1|B, 4J50|1|A+4J50|1|B, 3SYW|1|A+3SYW|1|B, 3SJ2|1|A+3SJ2|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3SYW|1|A+3SYW|1|B | Title: Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-RAY DIFFRACTION | 1.57 | 21 | ||
| 2 | 4YN6|1|A+4YN6|1|B | Title: Structural Insight reveals dynamics in repeating r(CAG) transcript found in Huntington's disease (HD) and Spinocerebellar ataxias (SCAs) | X-RAY DIFFRACTION | 2.3 | 19 | ||
| 3 | 4J50|1|A+4J50|1|B | Title: Crystal Structure of an Expanded RNA CAG Repeat | X-RAY DIFFRACTION | 1.65 | 19 | ||
| 4 | 3SJ2|1|A+3SJ2|1|B | Title: A Crystal Structure of a Model of the Repeating r(CGG) Transcript Found in Fragile X Syndrome | X-RAY DIFFRACTION | 1.36 | 19 | ||
| 5 | 3SZX|1|A+3SZX|1|B | Title: Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations | X-RAY DIFFRACTION | 2.2 | 19 |
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