Equivalence class NR_4.0_53396.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4LGT|1|E (rep) | stem-loop of 23S rRNA | Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate | X-ray diffraction | 1.3 | 2013-11-20 | ||||
| 2 | 4LGT|1|F | stem-loop of 23S rRNA | Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate | X-ray diffraction | 1.3 | 2013-11-20 | ||||
| 3 | 3DH3|1|F+ 3DH3|1|E | stem loop fragment of E. Coli 23S RNA | Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate | X-ray diffraction | 3 | 2009-04-28 | ||||
| 4 | 3DH3|1|G+ 3DH3|1|H | stem loop fragment of E. Coli 23S RNA | Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate | X-ray diffraction | 3 | 2009-04-28 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_53396.1 | NR_4.0_07802.1 | 8.0 | (2) 4LGT|1|F, 4LGT|1|E | (2) 3DH3|1|G+3DH3|1|H, 3DH3|1|F+3DH3|1|E | (0) |
| NR_4.0_53396.1 | NR_4.0_40716.1 | 8.0 | (2) 3DH3|1|G+3DH3|1|H, 3DH3|1|F+3DH3|1|E | (2) 4LGT|1|F, 4LGT|1|E | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_53396.1 | NR_4.0_63818.1 | 9.16 | (2) 3DH3|1|F+3DH3|1|E, 3DH3|1|G+3DH3|1|H | (2) 4LGT|1|E, 4LGT|1|F | (0) |
| NR_4.0_53396.1 | NR_4.0_84709.1 | 9.16 | (2) 4LGT|1|E, 4LGT|1|F | (2) 3DH3|1|G+3DH3|1|H, 3DH3|1|F+3DH3|1|E | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3DH3|1|F+3DH3|1|E | Title: Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate | X-RAY DIFFRACTION | 3 | 21 | ||
| 2 | 3DH3|1|G+3DH3|1|H | Title: Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate | X-RAY DIFFRACTION | 3 | 21 | ||
| 3 | 4LGT|1|F | Title: Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate | X-RAY DIFFRACTION | 1.3 | 19 | ||
| 4 | 4LGT|1|E | Title: Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate | X-RAY DIFFRACTION | 1.3 | 20 |
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