Equivalence class NR_4.0_52106.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5BWS|1|C+ 5BWS|1|D (rep) | RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F) | X-ray diffraction | 2.6 | 2016-06-22 | ||
| 2 | 5BWS|1|A+ 5BWS|1|B | RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F) | X-ray diffraction | 2.6 | 2016-06-22 | ||
| 3 | 5BXK|1|C+ 5BXK|1|D | RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) | X-ray diffraction | 3.1 | 2016-06-22 | ||
| 4 | 5BXK|1|A+ 5BXK|1|B | RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | synthetic construct | Synthetic | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) | X-ray diffraction | 3.1 | 2016-06-22 | ||
| 5 | 4WCP|1|A+ 4WCP|1|B+ 4WCP|1|C | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site | X-ray diffraction | 2.4 | 2015-09-09 |
Release history
| Release | 3.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4WCP|1|A+4WCP|1|B+4WCP|1|C | Title: Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site | X-RAY DIFFRACTION | 2.4 | 22 | ||
| 2 | 5BXK|1|C+5BXK|1|D | Title: Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) | X-RAY DIFFRACTION | 3.1 | 23 | ||
| 3 | 5BWS|1|C+5BWS|1|D | Title: Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F) | X-RAY DIFFRACTION | 2.6 | 23 | ||
| 4 | 5BXK|1|A+5BXK|1|B | Title: Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) | X-RAY DIFFRACTION | 3.1 | 22 | ||
| 5 | 5BWS|1|A+5BWS|1|B | Title: Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F) | X-RAY DIFFRACTION | 2.6 | 23 |
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