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Equivalence class NR_4.0_51332.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15LZS|1|2 (rep)Transfer RNAtRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
25LZV|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
35LZZ|1|2Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
45LZW|1|2Transfer RNAP-site tRNA, mRNA (truncated)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
56MTB|1|2Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)Electron microscopy3.62018-11-21
65LZT|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
75LZX|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
86FRK|1|2Transfer RNAtRNAOryctolagus cuniculusEukaryaRF00005Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexElectron microscopy3.72018-03-28
93JAH|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
106HCF|1|23Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonElectron microscopy3.92018-10-17
113JAG|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
123JAI|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
135LZU|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
143JAJ|1|3Transfer RNAVal tRNAOryctolagus cuniculusEukaryaRF00005Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
153JAN|1|3Transfer RNAVal tRNAOryctolagus cuniculusEukaryaRF00005Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05

Release history

Release9.179.18
Date2018-11-232018-11-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_51332.5NR_4.0_51332.49.17(14) 6HCF|1|23, 6FRK|1|2, 5LZZ|1|2, 5LZX|1|2, 5LZW|1|2, 5LZV|1|2, 5LZU|1|2, 5LZT|1|2, 5LZS|1|2, 3JAN|1|3, 3JAJ|1|3, 3JAI|1|2, 3JAH|1|2, 3JAG|1|2(1) 6MTB|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
15LZU|1|2Title: Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.7576
25LZS|1|2Title: Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.3176
36MTB|1|2Title: Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.676
45LZZ|1|2Title: Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.4776
55LZX|1|2Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.6776
65LZW|1|2Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.5376
75LZT|1|2Title: Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.6576
85LZV|1|2Title: Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.3576
93JAH|1|2Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.4576
103JAG|1|2Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.6576
113JAI|1|2Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.6576
126HCF|1|23Title: Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.976
136FRK|1|2Title: Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.776
143JAN|1|3Title: Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.7576
153JAJ|1|3Title: Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.7576

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