Equivalence class NR_4.0_51313.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 466D|1|C+ 466D|1|D (rep) | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3') | DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | X-ray diffraction | 1.16 | 1999-08-16 | ||||
| 2 | 4U38|1|A+ 4U38|1|B | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3') | synthetic construct | Synthetic | RNA duplex containing UU mispair | X-ray diffraction | 1.8 | 2014-08-13 | ||
| 3 | 466D|1|A+ 466D|1|B | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3') | DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | X-ray diffraction | 1.16 | 1999-08-16 | ||||
| 4 | 4U37|1|A+ 4U37|1|B | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*AP*GP*CP*UP*A)-3') | synthetic construct | Synthetic | Native 7mer-RNA duplex | X-ray diffraction | 1.55 | 2014-08-13 | ||
| 5 | 464D|1|A+ 464D|1|B | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*GP*CP*(IU)P*A)-3') | DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | X-ray diffraction | 1.23 | 1999-08-16 | ||||
| 6 | 434D|1|A+ 434D|1|B | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3') | 5'-R(*UP*AP*GP*CP*UP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' | X-ray diffraction | 1.16 | 1999-06-14 | ||||
| 7 | 4U38|1|C+ 4U38|1|D | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3') | synthetic construct | Synthetic | RNA duplex containing UU mispair | X-ray diffraction | 1.8 | 2014-08-13 | ||
| 8 | 434D|1|C+ 434D|1|D | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3') | 5'-R(*UP*AP*GP*CP*UP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' | X-ray diffraction | 1.16 | 1999-06-14 | ||||
| 9 | 464D|1|C+ 464D|1|D | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*GP*CP*(IU)P*A)-3') | DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | X-ray diffraction | 1.23 | 1999-08-16 | ||||
| 10 | 4U38|1|E+ 4U38|1|F | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3') | synthetic construct | Synthetic | RNA duplex containing UU mispair | X-ray diffraction | 1.8 | 2014-08-13 | ||
| 11 | 4U38|1|G+ 4U38|1|H | RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3') | synthetic construct | Synthetic | RNA duplex containing UU mispair | X-ray diffraction | 1.8 | 2014-08-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_51313.1 | NR_4.0_29211.1 | 6.0 | (2) 466D|1|C+466D|1|D, 466D|1|A+466D|1|B | (9) 4U38|1|A+4U38|1|B, 4U38|1|E+4U38|1|F, 434D|1|A+434D|1|B, 464D|1|A+464D|1|B, 4U37|1|A+4U37|1|B, 4U38|1|C+4U38|1|D, 4U38|1|G+4U38|1|H, 434D|1|C+434D|1|D, 464D|1|C+464D|1|D | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 466D|1|A+466D|1|B | Title: DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | X-RAY DIFFRACTION | 1.16 | 7 | ||
| 2 | 434D|1|A+434D|1|B | Title: 5'-R(*UP*AP*GP*CP*UP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' | X-RAY DIFFRACTION | 1.16 | 7 | ||
| 3 | 464D|1|A+464D|1|B | Title: DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | X-RAY DIFFRACTION | 1.23 | 7 | ||
| 4 | 4U38|1|E+4U38|1|F | Title: RNA duplex containing UU mispair | X-RAY DIFFRACTION | 1.8 | 7 | ||
| 5 | 4U37|1|A+4U37|1|B | Title: Native 7mer-RNA duplex | X-RAY DIFFRACTION | 1.55 | 7 | ||
| 6 | 4U38|1|G+4U38|1|H | Title: RNA duplex containing UU mispair | X-RAY DIFFRACTION | 1.8 | 7 | ||
| 7 | 4U38|1|A+4U38|1|B | Title: RNA duplex containing UU mispair | X-RAY DIFFRACTION | 1.8 | 7 | ||
| 8 | 4U38|1|C+4U38|1|D | Title: RNA duplex containing UU mispair | X-RAY DIFFRACTION | 1.8 | 7 | ||
| 9 | 466D|1|C+466D|1|D | Title: DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | X-RAY DIFFRACTION | 1.16 | 7 | ||
| 10 | 434D|1|C+434D|1|D | Title: 5'-R(*UP*AP*GP*CP*UP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' | X-RAY DIFFRACTION | 1.16 | 7 | ||
| 11 | 464D|1|C+464D|1|D | Title: DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | X-RAY DIFFRACTION | 1.23 | 7 |
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