Equivalence class NR_4.0_50602.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4DR7|1|b (rep) | 5'-R(P*UP*UP*U)-3' | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-ray diffraction | 3.75 | 2012-11-14 | ||
| 2 | 1I5L|1|Y | 5'-R(*UP*UP*U)-3' | CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA | X-ray diffraction | 2.75 | 2001-08-28 | ||||
| 3 | 1I5L|1|U | 5'-R(*UP*UP*U)-3' | CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA | X-ray diffraction | 2.75 | 2001-08-28 | ||||
| 4 | 4DR6|1|b | 5'-R(*UP*UP*U)-3' | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound | X-ray diffraction | 3.3 | 2012-11-14 | ||
| 5 | 5IP2|1|D | RNA (5'-D(P*UP*UP*U)-3') | synthetic construct | Synthetic | Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex | X-ray diffraction | 3.3 | 2017-03-22 | ||
| 6 | 5IP2|1|F | RNA (5'-D(P*UP*UP*U)-3') | synthetic construct | Synthetic | Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex | X-ray diffraction | 3.3 | 2017-03-22 |
Release history
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1I5L|1|Y | Title: CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA | X-RAY DIFFRACTION | 2.75 | 3 | ||
| 2 | 1I5L|1|U | Title: CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA | X-RAY DIFFRACTION | 2.75 | 3 | ||
| 3 | 5IP2|1|F | Title: Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex | X-RAY DIFFRACTION | 3.3 | 3 | ||
| 4 | 5IP2|1|D | Title: Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex | X-RAY DIFFRACTION | 3.3 | 3 | ||
| 5 | 4DR7|1|b | Title: Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-RAY DIFFRACTION | 3.75 | 3 | ||
| 6 | 4DR6|1|b | Title: Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound | X-RAY DIFFRACTION | 3.3 | 2 |
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