Equivalence class NR_4.0_50263.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4U6K|1|C (rep) | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Synthetic | Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC | X-ray diffraction | 1.5 | 2015-08-19 | ||
| 2 | 4U6M|1|A | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Synthetic | Crystal structure of DNA/RNA duplex obtained in the presence of Spermine | X-ray diffraction | 1.9 | 2015-08-19 | ||
| 3 | 4U6L|1|A | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Synthetic | Crystal structure of DNA/RNA duplex obtained in the presence of [Co(NH3)6]Cl3 and SrCl2 | X-ray diffraction | 1.9 | 2015-08-19 | ||
| 4 | 4U6K|1|A | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Synthetic | Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC | X-ray diffraction | 1.5 | 2015-08-19 | ||
| 5 | 2DQP|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Structural analyses of DNA:DNA and RNA:DNA duplexes containing 5-(N-aminohexyl)carbamoyl modified uridines | X-ray diffraction | 2.1 | 2007-04-17 | ||||
| 6 | 479D|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION | X-ray diffraction | 1.9 | 2000-05-15 | ||||
| 7 | 2DQO|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-ray diffraction | 2.3 | 2007-04-17 | ||||
| 8 | 2DQQ|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-ray diffraction | 2 | 2007-04-17 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 479D|1|B | Title: CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION | X-RAY DIFFRACTION | 1.9 | 9 | ||
| 2 | 4U6M|1|A | Title: Crystal structure of DNA/RNA duplex obtained in the presence of Spermine | X-RAY DIFFRACTION | 1.9 | 9 | ||
| 3 | 4U6L|1|A | Title: Crystal structure of DNA/RNA duplex obtained in the presence of [Co(NH3)6]Cl3 and SrCl2 | X-RAY DIFFRACTION | 1.9 | 9 | ||
| 4 | 2DQO|1|B | Title: Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-RAY DIFFRACTION | 2.3 | 9 | ||
| 5 | 2DQP|1|B | Title: Structural analyses of DNA:DNA and RNA:DNA duplexes containing 5-(N-aminohexyl)carbamoyl modified uridines | X-RAY DIFFRACTION | 2.1 | 9 | ||
| 6 | 2DQQ|1|B | Title: Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-RAY DIFFRACTION | 2 | 9 | ||
| 7 | 4U6K|1|C | Title: Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC | X-RAY DIFFRACTION | 1.5 | 9 | ||
| 8 | 4U6K|1|A | Title: Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC | X-RAY DIFFRACTION | 1.5 | 9 |
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