Equivalence class NR_4.0_49033.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5THE|1|H (rep) | RNA (5'-R(P*UP*AP*AP*AP*AP*AP*AP*A)-3') | Escherichia coli | Bacteria | Crystal structure of the C-terminal lobe of a budding yeast Argonaute | X-ray diffraction | 2.1 | 2018-03-14 | ||
| 2 | 5THE|1|F | RNA (5'-R(P*UP*AP*AP*AP*AP*AP*AP*A)-3') | Escherichia coli | Bacteria | Crystal structure of the C-terminal lobe of a budding yeast Argonaute | X-ray diffraction | 2.1 | 2018-03-14 | ||
| 3 | 5THE|1|B | RNA (5'-R(P*UP*AP*AP*AP*AP*AP*AP*A)-3') | Escherichia coli | Bacteria | Crystal structure of the C-terminal lobe of a budding yeast Argonaute | X-ray diffraction | 2.1 | 2018-03-14 | ||
| 4 | 5THE|1|D | RNA (5'-R(P*UP*AP*AP*AP*AP*AP*AP*A)-3') | Escherichia coli | Bacteria | Crystal structure of the C-terminal lobe of a budding yeast Argonaute | X-ray diffraction | 2.1 | 2018-03-14 | ||
| 5 | 6BBO|1|F+ 6BBO|1|G | RNA (5'-R(*UP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*U)-3') | Escherichia coli | Bacteria | Crystal structure of human APOBEC3H/RNA complex | X-ray diffraction | 3.43 | 2018-01-10 | ||
| 6 | 6BBO|1|B+ 6BBO|1|C | RNA (5'-R(*UP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*U)-3') | Escherichia coli | Bacteria | Crystal structure of human APOBEC3H/RNA complex | X-ray diffraction | 3.43 | 2018-01-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_49033.1 | NR_4.0_53699.1 | 9.12 | (2) 6BBO|1|F+6BBO|1|G, 6BBO|1|B+6BBO|1|C | (4) 5THE|1|H, 5THE|1|F, 5THE|1|D, 5THE|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_49033.1 | NR_4.0_49033.2 | 9.15 | (4) 5THE|1|H, 5THE|1|B, 5THE|1|D, 5THE|1|F | (2) 6BBO|1|F+6BBO|1|G, 6BBO|1|B+6BBO|1|C | (0) |
| NR_4.0_49033.1 | NR_4.0_55759.1 | 9.15 | (2) 6BBO|1|B+6BBO|1|C, 6BBO|1|F+6BBO|1|G | (4) 5THE|1|D, 5THE|1|H, 5THE|1|B, 5THE|1|F | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5THE|1|F | Title: Crystal structure of the C-terminal lobe of a budding yeast Argonaute | X-RAY DIFFRACTION | 2.1 | 8 | ||
| 2 | 5THE|1|H | Title: Crystal structure of the C-terminal lobe of a budding yeast Argonaute | X-RAY DIFFRACTION | 2.1 | 8 | ||
| 3 | 5THE|1|B | Title: Crystal structure of the C-terminal lobe of a budding yeast Argonaute | X-RAY DIFFRACTION | 2.1 | 8 | ||
| 4 | 5THE|1|D | Title: Crystal structure of the C-terminal lobe of a budding yeast Argonaute | X-RAY DIFFRACTION | 2.1 | 8 | ||
| 5 | 6BBO|1|B+6BBO|1|C | Title: Crystal structure of human APOBEC3H/RNA complex | X-RAY DIFFRACTION | 3.43 | 8 | ||
| 6 | 6BBO|1|F+6BBO|1|G | Title: Crystal structure of human APOBEC3H/RNA complex | X-RAY DIFFRACTION | 3.43 | 8 |
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