Equivalence class NR_4.0_45125.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3VYX|1|B+ 3VYX|1|C (rep) | RNA (5'-R(P*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3') | Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase (DHX9) | X-ray diffraction | 2.29 | 2013-02-13 | ||||
| 2 | 3ZD7|1|C+ 3ZD7|1|D | RNA DUPLEX | synthetic construct | Synthetic | Snapshot 3 of RIG-I scanning on RNA duplex | X-ray diffraction | 2.5 | 2013-08-07 | ||
| 3 | 4BPB|1|C+ 4BPB|1|D | 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3' | Homo sapiens | Eukarya | STRUCTURAL INSIGHTS INTO RNA RECOGNITION BY RIG-I | X-ray diffraction | 2.58 | 2013-06-19 | ||
| 4 | 3ZD6|1|C+ 3ZD6|1|D | RNA DUPLEX | synthetic construct | Synthetic | Snapshot 1 of RIG-I scanning on RNA duplex | X-ray diffraction | 2.8 | 2013-08-07 | ||
| 5 | 2YKG|1|C+ 2YKG|1|D | 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3' | Homo sapiens | Eukarya | Structural insights into RNA recognition by RIG-I | X-ray diffraction | 2.5 | 2011-10-26 | ||
| 6 | 3VYY|1|C+ 3VYY|1|D | RNA (5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3') | Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase A (DHX9) | X-ray diffraction | 2.9 | 2013-02-13 | ||||
| 7 | 3VYY|1|E+ 3VYY|1|F | RNA (5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3') | Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase A (DHX9) | X-ray diffraction | 2.9 | 2013-02-13 | ||||
| 8 | 3VYY|1|G | RNA (5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3') | Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase A (DHX9) | X-ray diffraction | 2.9 | 2013-02-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_45125.1 | NR_all_13484.1 | 3.0 | (1) 3VYY|1|G | (7) 2YKG|1|C+2YKG|1|D, 3VYX|1|B+3VYX|1|C, 3VYY|1|C+3VYY|1|D, 3VYY|1|E+3VYY|1|F, 3ZD6|1|C+3ZD6|1|D, 3ZD7|1|C+3ZD7|1|D, 4BPB|1|C+4BPB|1|D | (8) 2YKG|1|C, 3VYX|1|B, 3VYY|1|C, 3VYY|1|E, 3VYY|1|F, 3ZD6|1|C, 3ZD7|1|C, 4BPB|1|C |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_45125.1 | NR_4.0_87077.1 | 6.0 | (1) 3VYX|1|B+3VYX|1|C | (7) 2YKG|1|C+2YKG|1|D, 3VYY|1|C+3VYY|1|D, 3VYY|1|E+3VYY|1|F, 3VYY|1|G, 3ZD6|1|C+3ZD6|1|D, 3ZD7|1|C+3ZD7|1|D, 4BPB|1|C+4BPB|1|D | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3VYX|1|B+3VYX|1|C | Title: Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase (DHX9) | X-RAY DIFFRACTION | 2.29 | 10 | ||
| 2 | 3ZD6|1|C+3ZD6|1|D | Title: Snapshot 1 of RIG-I scanning on RNA duplex | X-RAY DIFFRACTION | 2.8 | 10 | ||
| 3 | 3ZD7|1|C+3ZD7|1|D | Title: Snapshot 3 of RIG-I scanning on RNA duplex | X-RAY DIFFRACTION | 2.5 | 10 | ||
| 4 | 4BPB|1|C+4BPB|1|D | Title: STRUCTURAL INSIGHTS INTO RNA RECOGNITION BY RIG-I | X-RAY DIFFRACTION | 2.58 | 10 | ||
| 5 | 2YKG|1|C+2YKG|1|D | Title: Structural insights into RNA recognition by RIG-I | X-RAY DIFFRACTION | 2.5 | 10 | ||
| 6 | 3VYY|1|C+3VYY|1|D | Title: Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase A (DHX9) | X-RAY DIFFRACTION | 2.9 | 10 | ||
| 7 | 3VYY|1|E+3VYY|1|F | Title: Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase A (DHX9) | X-RAY DIFFRACTION | 2.9 | 10 | ||
| 8 | 3VYY|1|G | Title: Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase A (DHX9) | X-RAY DIFFRACTION | 2.9 | 10 |
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