Equivalence class NR_4.0_45101.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2YGH|1|A (rep) | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine | X-ray diffraction | 2.6 | 2011-09-07 |
| 2 | 3GX5|1|A | SAM riboswitch | RNA (94-MER) | RF00162 | Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM | X-ray diffraction | 2.4 | 2010-01-12 | ||
| 3 | 3GX3|1|A | SAM riboswitch | RNA (94-MER) | RF00162 | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH | X-ray diffraction | 2.7 | 2010-01-12 | ||
| 4 | 3IQR|1|A | SAM riboswitch | SAM-I riboswitch | RF00162 | SAM-I riboswitch from T. tencongensis variant A94G bound with SAM | X-ray diffraction | 2.55 | 2010-08-04 | ||
| 5 | 3IQP|1|A | SAM riboswitch | SAM-I riboswitch | RF00162 | SAM-I riboswitch from T. tencongensis variant A94G apo form | X-ray diffraction | 2.9 | 2010-08-04 | ||
| 6 | 3GX7|1|A | SAM riboswitch | RNA (94-MER) | RF00162 | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM | X-ray diffraction | 2.95 | 2010-01-12 | ||
| 7 | 3IQN|1|A | SAM riboswitch | SAM-I riboswitch | RF00162 | Free-state structural transitions of the SAM-I riboswitch | X-ray diffraction | 2.7 | 2010-08-04 | ||
| 8 | 2GIS|1|A | SAM riboswitch | SAM-I riboswitch | RF00162 | Structure of the S-adenosylmethionine riboswitch mRNA regulatory element | X-ray diffraction | 2.9 | 2006-07-04 | ||
| 9 | 2YDH|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM | X-ray diffraction | 2.9 | 2011-09-07 |
| 10 | 3GX2|1|A | SAM riboswitch | RNA (94-MER) | RF00162 | TteSAM-I riboswitch variant A94GU34C bound to sinefungin | X-ray diffraction | 2.9 | 2010-01-12 | ||
| 11 | 3GX6|1|A | SAM riboswitch | RNA (94-MER) | RF00162 | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride | X-ray diffraction | 2.8 | 2010-01-12 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2YGH|1|A | Title: SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine | X-RAY DIFFRACTION | 2.6 | 95 | ||
| 2 | 3GX3|1|A | Title: Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH | X-RAY DIFFRACTION | 2.7 | 94 | ||
| 3 | 3GX7|1|A | Title: Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM | X-RAY DIFFRACTION | 2.95 | 94 | ||
| 4 | 3GX6|1|A | Title: Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride | X-RAY DIFFRACTION | 2.8 | 94 | ||
| 5 | 2YDH|1|A | Title: Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM | X-RAY DIFFRACTION | 2.9 | 94 | ||
| 6 | 3GX5|1|A | Title: Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM | X-RAY DIFFRACTION | 2.4 | 94 | ||
| 7 | 3GX2|1|A | Title: TteSAM-I riboswitch variant A94GU34C bound to sinefungin | X-RAY DIFFRACTION | 2.9 | 94 | ||
| 8 | 2GIS|1|A | Title: Structure of the S-adenosylmethionine riboswitch mRNA regulatory element | X-RAY DIFFRACTION | 2.9 | 94 | ||
| 9 | 3IQN|1|A | Title: Free-state structural transitions of the SAM-I riboswitch | X-RAY DIFFRACTION | 2.7 | 94 | ||
| 10 | 3IQR|1|A | Title: SAM-I riboswitch from T. tencongensis variant A94G bound with SAM | X-RAY DIFFRACTION | 2.55 | 94 | ||
| 11 | 3IQP|1|A | Title: SAM-I riboswitch from T. tencongensis variant A94G apo form | X-RAY DIFFRACTION | 2.9 | 94 |
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