Equivalence class NR_4.0_43174.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5TDJ|1|A (rep) | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA decamer duplex with four 2'-5'-linkages | X-ray diffraction | 1.5 | 2017-01-11 | ||
| 2 | 5TDJ|1|B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA decamer duplex with four 2'-5'-linkages | X-ray diffraction | 1.5 | 2017-01-11 | ||
| 3 | 5TDK|1|A+ 5TDK|1|B | RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA decamer duplex with eight 2'-5'-linkages | X-ray diffraction | 1.43 | 2017-01-11 | ||
| 4 | 4MSR|1|A+ 4MSR|1|B | RNA 10mer duplex with six 2'-5'-linkages | RNA 10mer duplex with six 2'-5'-linkages | X-ray diffraction | 1.2 | 2014-02-12 | ||||
| 5 | 4MS9|1|A | Native RNA duplex 10mer | Native RNA-10mer Structure: ccggcgccgg | X-ray diffraction | 1.32 | 2014-02-12 | ||||
| 6 | 4MSB|1|A+ 4MSB|1|B | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 | ||||
| 7 | 4MSB|1|C+ 4MSB|1|D | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 | ||||
| 8 | 4MSB|1|E+ 4MSB|1|F | RNA 10mer duplex with two 2'-5'-linkages | RNA 10mer duplex with two 2'-5'-linkages | X-ray diffraction | 1.55 | 2014-02-12 | ||||
| 9 | 100D|1|A+ 100D|1|B | DNA/RNA (5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3') | CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING | X-ray diffraction | 1.9 | 1995-03-31 | ||||
| 10 | 161D|1|B | DNA/RNA (5'-D(*CP*CP*GP*GP*CP*)-R(*GP*)-D(*CP*CP*GP*G)-3') | A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET | X-ray diffraction | 1.9 | 1994-05-18 | ||||
| 11 | 161D|1|A | DNA/RNA (5'-D(*CP*CP*GP*GP*CP*)-R(*GP*)-D(*CP*CP*GP*G)-3') | A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET | X-ray diffraction | 1.9 | 1994-05-18 | ||||
| 12 | 394D|1|A+ 394D|1|B | DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP*GP)-D(*CP*CP*GP*G)-3') | CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMERS D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-ray diffraction | 1.9 | 1998-05-01 | ||||
| 13 | 393D|1|A | DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3') | synthetic construct | CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-ray diffraction | 2 | 1998-05-01 | |||
| 14 | 393D|1|B | DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3') | synthetic construct | CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-ray diffraction | 2 | 1998-05-01 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4MSB|1|E+4MSB|1|F | Title: RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 | ||
| 2 | 4MS9|1|A | Title: Native RNA-10mer Structure: ccggcgccgg | X-RAY DIFFRACTION | 1.32 | 10 | ||
| 3 | 5TDJ|1|A | Title: RNA decamer duplex with four 2'-5'-linkages | X-RAY DIFFRACTION | 1.5 | 10 | ||
| 4 | 5TDJ|1|B | Title: RNA decamer duplex with four 2'-5'-linkages | X-RAY DIFFRACTION | 1.5 | 10 | ||
| 5 | 4MSB|1|C+4MSB|1|D | Title: RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 | ||
| 6 | 4MSB|1|A+4MSB|1|B | Title: RNA 10mer duplex with two 2'-5'-linkages | X-RAY DIFFRACTION | 1.55 | 10 | ||
| 7 | 5TDK|1|A+5TDK|1|B | Title: RNA decamer duplex with eight 2'-5'-linkages | X-RAY DIFFRACTION | 1.43 | 10 | ||
| 8 | 4MSR|1|A+4MSR|1|B | Title: RNA 10mer duplex with six 2'-5'-linkages | X-RAY DIFFRACTION | 1.2 | 12 | ||
| 9 | 161D|1|B | Title: A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET | X-RAY DIFFRACTION | 1.9 | 1 | ||
| 10 | 394D|1|A+394D|1|B | Title: CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMERS D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-RAY DIFFRACTION | 1.9 | 2 | ||
| 11 | 393D|1|B | Title: CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-RAY DIFFRACTION | 2 | 1 | ||
| 12 | 393D|1|A | Title: CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | X-RAY DIFFRACTION | 2 | 1 | ||
| 13 | 161D|1|A | Title: A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET | X-RAY DIFFRACTION | 1.9 | 1 | ||
| 14 | 100D|1|A+100D|1|B | Title: CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING | X-RAY DIFFRACTION | 1.9 | 2 |
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