Equivalence class NR_4.0_42646.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3D2V|1|A (rep) | TPP riboswitch (THI element) | TPP-specific riboswitch | Arabidopsis thaliana | Eukarya | RF00059 | Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate | X-ray diffraction | 2 | 2008-07-01 |
| 2 | 3D2G|1|A | TPP riboswitch (THI element) | TPP-specific riboswitch | Arabidopsis thaliana | Eukarya | RF00059 | Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch | X-ray diffraction | 2.25 | 2008-07-01 |
| 3 | 3D2X|1|A | TPP riboswitch (THI element) | TPP-specific riboswitch | Arabidopsis thaliana | Eukarya | RF00059 | Structure of the thiamine pyrophosphate-specific riboswitch bound to oxythiamine pyrophosphate | X-ray diffraction | 2.5 | 2008-07-01 |
| 4 | 3D2V|1|B | TPP riboswitch (THI element) | TPP-specific riboswitch | Arabidopsis thaliana | Eukarya | RF00059 | Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate | X-ray diffraction | 2 | 2008-07-01 |
| 5 | 3D2G|1|B | TPP riboswitch (THI element) | TPP-specific riboswitch | Arabidopsis thaliana | Eukarya | RF00059 | Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch | X-ray diffraction | 2.25 | 2008-07-01 |
| 6 | 3D2X|1|B | TPP riboswitch (THI element) | TPP-specific riboswitch | Arabidopsis thaliana | Eukarya | RF00059 | Structure of the thiamine pyrophosphate-specific riboswitch bound to oxythiamine pyrophosphate | X-ray diffraction | 2.5 | 2008-07-01 |
| 7 | 2CKY|1|A | TPP riboswitch (THI element) | NUCLEIC ACID | Arabidopsis thaliana | Eukarya | RF00059 | Structure of the Arabidopsis thaliana thiamine pyrophosphate riboswitch with its regulatory ligand | X-ray diffraction | 2.9 | 2006-05-08 |
| 8 | 2CKY|1|B | TPP riboswitch (THI element) | NUCLEIC ACID | Arabidopsis thaliana | Eukarya | RF00059 | Structure of the Arabidopsis thaliana thiamine pyrophosphate riboswitch with its regulatory ligand | X-ray diffraction | 2.9 | 2006-05-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3D2G|1|B | Title: Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch | X-RAY DIFFRACTION | 2.25 | 77 | ||
| 2 | 3D2X|1|B | Title: Structure of the thiamine pyrophosphate-specific riboswitch bound to oxythiamine pyrophosphate | X-RAY DIFFRACTION | 2.5 | 77 | ||
| 3 | 3D2V|1|B | Title: Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate | X-RAY DIFFRACTION | 2 | 77 | ||
| 4 | 3D2V|1|A | Title: Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate | X-RAY DIFFRACTION | 2 | 77 | ||
| 5 | 3D2X|1|A | Title: Structure of the thiamine pyrophosphate-specific riboswitch bound to oxythiamine pyrophosphate | X-RAY DIFFRACTION | 2.5 | 77 | ||
| 6 | 3D2G|1|A | Title: Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch | X-RAY DIFFRACTION | 2.25 | 77 | ||
| 7 | 2CKY|1|A | Title: Structure of the Arabidopsis thaliana thiamine pyrophosphate riboswitch with its regulatory ligand | X-RAY DIFFRACTION | 2.9 | 77 | ||
| 8 | 2CKY|1|B | Title: Structure of the Arabidopsis thaliana thiamine pyrophosphate riboswitch with its regulatory ligand | X-RAY DIFFRACTION | 2.9 | 77 |
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