#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15FDU|1|1A (rep)Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92016-01-27
25HD1|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.72016-04-06
35F8K|1|1ALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-02-03
45J4B|1|1ALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
55DOY|1|1ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
65FDU|1|2ALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92016-01-27
75F8K|1|2ALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-02-03
84YZV|1|YALarge subunit ribosomal RNA23S rRNA, CC-puromycinThermus thermophilusBacteriaRF02541Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-ray diffraction3.12015-10-21
94V83|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-ray diffraction3.52014-07-09
104V83|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-ray diffraction3.52014-07-09
115HD1|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.72016-04-06
124W4G|1|YALarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-ray diffraction3.32015-10-21
134YZV|1|RALarge subunit ribosomal RNA23S rRNA, CC-puromycinThermus thermophilusBacteriaRF02541Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-ray diffraction3.12015-10-21
145J4B|1|2ALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
155DOY|1|2ALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
164W4G|1|RALarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-ray diffraction3.32015-10-21
174V84|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-ray diffraction3.42014-07-09
184V84|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-ray diffraction3.42014-07-09
194YPB|1|RALarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-ray diffraction3.42015-10-21
204YPB|1|YALarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-ray diffraction3.42015-10-21
214V9I|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-ray diffraction3.32014-07-09
224V9I|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-ray diffraction3.32014-07-09
234V8C|1|AALarge subunit ribosomal RNARNA (2912-MER)Thermus thermophilusBacteriaRF02541Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-ray diffraction3.32014-07-09
244V9Q|1|AALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-ray diffraction3.42014-07-09
254TUE|1|YALarge subunit ribosomal RNA23S rRNA, CC-PuroThermus thermophilusBacteriaRF02541Crystal structure of ASL-SufJ bound to Codon ACC-U on the RibosomeX-ray diffraction3.52015-05-13
264V9Q|1|CALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-ray diffraction3.42014-07-09
274V8N|1|DALarge subunit ribosomal RNA23S RIBOSOMAL RNAThermus thermophilusBacteriaRF02541The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-ray diffraction3.12014-07-09
284TUE|1|RALarge subunit ribosomal RNA23S rRNA, CC-PuroThermus thermophilusBacteriaRF02541Crystal structure of ASL-SufJ bound to Codon ACC-U on the RibosomeX-ray diffraction3.52015-05-13
294TUD|1|RALarge subunit ribosomal RNA23S rRNA, CC-PuroThermus thermophilusBacteriaRF02541Crystal structure of ASL-SufJ bound to Codon ACC-C on the RibosomeX-ray diffraction3.62015-05-13
304V8N|1|BALarge subunit ribosomal RNA23S RIBOSOMAL RNAThermus thermophilusBacteriaRF02541The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-ray diffraction3.12014-07-09
315IBB|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.962016-05-25
324WT8|1|D1Large subunit ribosomal RNA23S rRNA (2899-MER)Thermus thermophilusBacteriaRF02541Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-ray diffraction3.42015-01-21
334TUD|1|YALarge subunit ribosomal RNA23S rRNA, CC-PuroThermus thermophilusBacteriaRF02541Crystal structure of ASL-SufJ bound to Codon ACC-C on the RibosomeX-ray diffraction3.62015-05-13
344WT8|1|C1Large subunit ribosomal RNA23S rRNA (2899-MER)Thermus thermophilusBacteriaRF02541Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-ray diffraction3.42015-01-21
354V7M|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541The structures of Capreomycin bound to the 70S ribosome.X-ray diffraction3.452014-07-09
365IBB|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.962016-05-25
374V8E|1|AALarge subunit ribosomal RNARNA (2912-MER)Thermus thermophilusBacteriaRF02541Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.32014-07-09
384V9B|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal Structure of the 70S ribosome with tigecycline.X-ray diffraction3.12014-07-09
395E81|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-ray diffraction2.952016-01-27
404V5K|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-ray diffraction3.22014-07-09
414V8C|1|BALarge subunit ribosomal RNARNA (2912-MER)Thermus thermophilusBacteriaRF02541Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-ray diffraction3.32014-07-09
424V5K|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-ray diffraction3.22014-07-09
434WZD|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with cognate tRNA-Tyr in the P-siteX-ray diffraction3.12015-06-10
445IB8|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-siteX-ray diffraction3.132016-05-25
455E7K|1|1HLarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-ray diffraction3.22016-01-27
464V8E|1|CALarge subunit ribosomal RNARNA (2912-MER)Thermus thermophilusBacteriaRF02541Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.32014-07-09
474WRO|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
485EL6|1|1HLarge subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-ray diffraction3.12016-01-27
495E81|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-ray diffraction2.952016-01-27
504V7M|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541The structures of Capreomycin bound to the 70S ribosome.X-ray diffraction3.452014-07-09
514WZD|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with cognate tRNA-Tyr in the P-siteX-ray diffraction3.12015-06-10
524WR6|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.052015-06-10
535IB8|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-siteX-ray diffraction3.132016-05-25
545EL4|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-ray diffraction3.152016-01-27
554WSM|1|1HLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-ray diffraction3.32015-06-10
564V9L|1|BALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF0254170S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction3.52014-07-09
574V9B|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal Structure of the 70S ribosome with tigecycline.X-ray diffraction3.12014-07-09
584V9L|1|DALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF0254170S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction3.52014-07-09
595EL4|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-ray diffraction3.152016-01-27
605EL6|1|14Large subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-ray diffraction3.12016-01-27
615D8B|1|VCLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatchX-ray diffraction3.632015-10-14
624V8U|1|BALarge subunit ribosomal RNA23S RIBOSOMAL RNAThermus thermophilusBacteriaRF02541Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-ray diffraction3.72014-07-09
634WR6|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.052015-06-10
645D8B|1|ZCLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatchX-ray diffraction3.632015-10-14
654V8Q|1|AALarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-ray diffraction3.12014-07-09
664V8U|1|DALarge subunit ribosomal RNA23S RIBOSOMAL RNAThermus thermophilusBacteriaRF02541Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-ray diffraction3.72014-07-09
674WRO|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
685E7K|1|14Large subunit ribosomal RNA23S rRNAThermus thermophilusBacteriaRF02541Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-ray diffraction3.22016-01-27
694WSM|1|14Large subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-ray diffraction3.32015-06-10
704XEJ|1|A23SLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541IRES bound to bacterial RibosomeX-ray diffraction3.82015-02-25
714XEJ|1|B23SLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541IRES bound to bacterial RibosomeX-ray diffraction3.82015-02-25
724W29|1|BALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF0254170S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.X-ray diffraction3.82014-10-01
734W29|1|DALarge subunit ribosomal RNA23S Ribosomal RNAThermus thermophilusBacteriaRF0254170S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.X-ray diffraction3.82014-10-01
744V4J|1|wLarge subunit ribosomal RNA23S LARGE SUBUNIT RIBOSOMAL RNAThermus thermophilusBacteriaRF02541Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.X-ray diffraction3.832014-07-09
754V5G|1|DALarge subunit ribosomal RNA23S RIBOSOMAL RNAThermus thermophilusBacteriaRF02541The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-ray diffraction3.62014-07-09
764V5G|1|BALarge subunit ribosomal RNA23S RIBOSOMAL RNAThermus thermophilusBacteriaRF02541The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-ray diffraction3.62014-07-09
775IMQ|1|DLarge subunit ribosomal RNA23S ribosomal RNAThermus thermophilusBacteriaRF02541Structure of ribosome bound to cofactor at 3.8 angstrom resolutionElectron microscopy3.82016-05-18

Release history

Release6.0
Date2017-04-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_41695.1NR_4.0_51018.16.0(77) 4WRO|1|1H, 4V84|1|DA, 4YPB|1|RA, 5F8K|1|2A, 4V9B|1|BA, 5J4B|1|1A, 4W29|1|DA, 4V5K|1|DA, 4WT8|1|D1, 5EL4|1|14, 4V8E|1|CA, 5IB8|1|14, 4V9L|1|BA, 4TUE|1|YA, 5DOY|1|2A, 4V84|1|BA, 4V8U|1|DA, 4WSM|1|14, 4YZV|1|RA, 4W4G|1|YA, 4WZD|1|1H, 4V9Q|1|AA, 4V8C|1|AA, 4YPB|1|YA, 5FDU|1|2A, 4V9B|1|DA, 5J4B|1|2A, 4W4G|1|RA, 4V7M|1|DA, 4WZD|1|14, 5EL4|1|1H, 4V8N|1|BA, 5IB8|1|1H, 4V9L|1|DA, 4V4J|1|w, 5E7K|1|14, 5FDU|1|1A, 4YZV|1|YA, 4V7M|1|BA, 4WR6|1|14, 4XEJ|1|A23S, 4V9Q|1|CA, 4WSM|1|1H, 4V9I|1|BA, 4V83|1|BA, 5EL6|1|14, 4V8N|1|DA, 5IBB|1|14, 4V5G|1|BA, 5E7K|1|1H, 5D8B|1|VC, 4WR6|1|1H, 4XEJ|1|B23S, 4TUD|1|RA, 4W29|1|BA, 4WT8|1|C1, 4V9I|1|DA, 5EL6|1|1H, 4V8U|1|BA, 5IBB|1|1H, 4V5K|1|BA, 5E81|1|14, 4V8C|1|BA, 5HD1|1|1A, 5D8B|1|ZC, 4V8Q|1|AA, 4TUD|1|YA, 4V5G|1|DA, 4WRO|1|14, 5IMQ|1|D, 5E81|1|1H, 4V8E|1|AA, 5HD1|1|2A, 4TUE|1|RA, 5DOY|1|1A, 4V83|1|DA, 5F8K|1|1A(0) (189) 1VY4|1|DA, 4TUB|1|RA, 4Z8C|1|1A, 5HCR|1|2A, 1VVJ|1|RA, 4WT1|1|1H, 4Y4P|1|2A, 5J4D|1|B, 4W2G|1|DA, 4WSD|1|14, 4Y4O|1|1A, 4V9M|1|DA, 4W2F|1|BA, 4WU1|1|1H, 4V9K|1|BA, 4V9S|1|BA, 4V87|1|DA, 4V8F|1|DA, 4V9H|1|BA, 4V5R|1|DA, 4V7Z|1|BA, 4V8D|1|BA, 4V5Q|1|BA, 4V67|1|BA, 4V7X|1|DA, 4LT8|1|RA, 4V5L|1|BA, 4V5S|1|DA, 4LNT|1|YA, 4V5F|1|DA, 4LFZ|1|RA, 4V5E|1|BA, 5HAU|1|2A, 1VY5|1|DA, 4L71|1|YA, 4ZER|1|1A, 5FDV|1|1A, 4L47|1|RA, 4WQU|1|AA, 4Z3S|1|2A, 5EL5|1|1H, 4W2H|1|DA, 4WQF|1|CA, 5DOX|1|1A, 4W2G|1|BA, 4WQ1|1|14, 4V8I|1|BA, 4V95|1|BA, 4V7J|1|AA, 4V8G|1|DA, 4V8X|1|BA, 4V6F|1|DA, 4V7L|1|DA, 4V8F|1|AA, 4V51|1|BA, 4V6A|1|BA, 4V7K|1|AA, 4TUC|1|RA, 4V63|1|DA, 4TUA|1|YA, 5J8B|1|A, 4P70|1|RA, 5J4C|1|2A, 4LT8|1|YA, 4WZO|1|1H, 5HAU|1|1A, 5IB7|1|14, 4WQY|1|AA, 4WU1|1|14, 5HCQ|1|2A, 4V9R|1|DA, 4WQR|1|1H, 4WSD|1|1H, 4V9A|1|DA, 4V9N|1|BA, 4V97|1|BA, 4V9K|1|DA, 4V7X|1|BA, 4V8A|1|AA, 4V90|1|BA, 4V5J|1|DA, 4V7P|1|CA, 4WRA|1|14, 4V7Z|1|DA, 4V5F|1|BA, 4V5Q|1|DA, 4V7L|1|BA, 4LEL|1|YA, 4V5D|1|DA, 4L71|1|RA, 4V5C|1|BA, 1VY7|1|DA, 5EL5|1|14, 5J4

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_41695.1NR_4.0_80669.17.0(77) 4V4J|1|w, 4V84|1|BA, 5F8K|1|2A, 5IBB|1|1H, 4V5K|1|DA, 4V8E|1|AA, 5HD1|1|1A, 4TUE|1|YA, 4V83|1|DA, 4V8N|1|DA, 4TUD|1|YA, 4V5K|1|BA, 4V8C|1|AA, 4V9B|1|BA, 4W29|1|DA, 4V7M|1|DA, 4V8N|1|BA, 4V9L|1|BA, 4WR6|1|14, 4V8U|1|DA, 4V9Q|1|CA, 4WSM|1|14, 4V9I|1|BA, 4W4G|1|YA, 4WZD|1|14, 5D8B|1|VC, 4V9Q|1|AA, 4WRO|1|1H, 4XEJ|1|B23S, 5E7K|1|14, 4WT8|1|C1, 4YZV|1|YA, 5EL4|1|14, 4XEJ|1|A23S, 5DOY|1|2A, 5EL6|1|1H, 5IBB|1|14, 4YZV|1|RA, 5E81|1|14, 5FDU|1|2A, 5J4B|1|2A, 4TUE|1|RA, 5EL6|1|14, 5IB8|1|1H, 4V5G|1|BA, 4V84|1|DA, 5FDU|1|1A, 5IMQ|1|D, 4V7M|1|BA, 4V8E|1|CA, 5HD1|1|2A, 4V8Q|1|AA, 4V8C|1|BA, 4V9B|1|DA, 4W4G|1|RA, 4V9L|1|DA, 4WR6|1|1H, 4TUD|1|RA, 4W29|1|BA, 4WSM|1|1H, 4V9I|1|DA, 4WZD|1|1H, 5D8B|1|ZC, 4YPB|1|RA, 5E7K|1|1H, 4WT8|1|D1, 5EL4|1|1H, 5F8K|1|1A, 5E81|1|1H, 4V83|1|BA, 4V5G|1|DA, 5J4B|1|1A, 4V8U|1|BA, 4WRO|1|14, 5DOY|1|1A, 4YPB|1|YA, 5IB8|1|14(0) (189) 4WQY|1|CA, 4V8A|1|AA, 4P70|1|YA, 4Y4O|1|2A, 4V7Y|1|DA, 4LT8|1|RA, 4WU1|1|14, 4V7W|1|BA, 4LFZ|1|YA, 4WRA|1|1H, 4LSK|1|RA, 4L71|1|RA, 4WQU|1|AA, 4V7Z|1|DA, 4P6F|1|RA, 4WQ1|1|1H, 4V7X|1|BA, 4LNT|1|YA, 4WSD|1|1H, 4LEL|1|RA, 4WQY|1|AA, 4V87|1|DA, 4WQF|1|CA, 4V7Y|1|BA, 4LSK|1|YA, 4WT1|1|1H, 4V7P|1|CA, 4LFZ|1|RA, 4WRA|1|14, 4V8A|1|BA, 4WQR|1|1H, 4V7Z|1|BA, 4LT8|1|YA, 4V7W|1|DA, 4LNT|1|RA, 4WSD|1|14, 4V8B|1|DA, 4L71|1|YA, 4WQU|1|CA, 4V87|1|AA, 4P6F|1|YA, 1VY7|1|BA, 4WQF|1|AA, 4V7X|1|DA, 4W2I|1|DA, 4V7P|1|BA, 4LEL|1|YA, 4V7J|1|BA, 4L47|1|RA, 4WQR|1|14, 4V6F|1|AA, 1VY5|1|DA, 4WPO|1|CA, 1VVJ|1|RA, 4W2H|1|BA, 4V7K|1|BA, 4V6G|1|BA, 1VY6|1|DA, 4W2G|1|BA, 1VY4|1|BA, 4W2I|1|BA, 4V7L|1|DA, 4W2F|1|DA, 4V7J|1|AA, 1VY7|1|DA, 1VY5|1|BA, 4WPO|1|AA, 4W2G|1|DA, 4V7K|1|AA, 4L47|1|YA, 4V6F|1|DA, 1VY6|1|BA, 4WQ1|1|14, 4W2H|1|DA, 4V7L|1|BA, 5J4C|1|2A, 4W2F|1|BA, 4V6G|1|DA, 4V9R|1|BA, 4V6A|1|BA, 1VY4|1|DA, 4V5S|1|DA, 5J4D|1|GB, 4V5Q|1|BA, 5IB7|1|14, 4V9S|1|BA, 5HCP|1|2A, 4V9M|1|DA, 4V63|1|DA, 4V5R|1|BA, 5J4C|1|1A, 4W2E|1|A, 4V9K|1|DA, 5H

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
14V4J|1|wTitle: Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.X-RAY DIFFRACTION3.832889
24W4G|1|RATitle: Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-RAY DIFFRACTION3.32891
34YZV|1|RATitle: Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-RAY DIFFRACTION3.12891
44YPB|1|RATitle: Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-RAY DIFFRACTION3.42891
54W4G|1|YATitle: Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codonX-RAY DIFFRACTION3.32875
64YZV|1|YATitle: Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codonX-RAY DIFFRACTION3.12875
74YPB|1|YATitle: Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codonX-RAY DIFFRACTION3.42875
85J4B|1|1ATitle: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.62861
95DOY|1|1ATitle: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.62860
105DOY|1|2ATitle: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.62789
114TUE|1|RATitle: Crystal structure of ASL-SufJ bound to Codon ACC-U on the RibosomeX-RAY DIFFRACTION3.52882
124TUD|1|RATitle: Crystal structure of ASL-SufJ bound to Codon ACC-C on the RibosomeX-RAY DIFFRACTION3.62882
134TUD|1|YATitle: Crystal structure of ASL-SufJ bound to Codon ACC-C on the RibosomeX-RAY DIFFRACTION3.62882
145E7K|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-RAY DIFFRACTION3.22833
155EL6|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-RAY DIFFRACTION3.12833
165EL4|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-RAY DIFFRACTION3.152833
175IB8|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-siteX-RAY DIFFRACTION3.132831
185E81|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.952888
195IBB|1|1HTitle: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.962841
204WSM|1|1HTitle: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-RAY DIFFRACTION3.32912
214WRO|1|1HTitle: Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.052912
224WR6|1|1HTitle: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.052912
234WZD|1|1HTitle: Complex of 70S ribosome with cognate tRNA-Tyr in the P-siteX-RAY DIFFRACTION3.12912
244V9B|1|BATitle: Crystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12912
254V8C|1|AATitle: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32912
264V8E|1|AATitle: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.32912
274TUE|1|YATitle: Crystal structure of ASL-SufJ bound to Codon ACC-U on the RibosomeX-RAY DIFFRACTION3.52882
284V8E|1|CATitle: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.32907
294V8C|1|BATitle: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32909
304V9B|1|DATitle: Crystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12906
314WZD|1|14Title: Complex of 70S ribosome with cognate tRNA-Tyr in the P-siteX-RAY DIFFRACTION3.12909
324WR6|1|14Title: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.052907
334WRO|1|14Title: Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.052909
344WSM|1|14Title: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sitesX-RAY DIFFRACTION3.32909
355IB8|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-siteX-RAY DIFFRACTION3.132825
365IBB|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.962810
375E81|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.952855
385E7K|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-siteX-RAY DIFFRACTION3.22861
395EL6|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycinX-RAY DIFFRACTION3.12861
405EL4|1|14Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first positionX-RAY DIFFRACTION3.152861
414V9Q|1|CATitle: Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-RAY DIFFRACTION3.42832
424V9Q|1|AATitle: Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-RAY DIFFRACTION3.42832
435D8B|1|VCTitle: Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatchX-RAY DIFFRACTION3.632879
445D8B|1|ZCTitle: Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatchX-RAY DIFFRACTION3.632879
454V7M|1|DATitle: The structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.452775
464V7M|1|BATitle: The structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.452789
474V5K|1|BATitle: Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22807
484V5K|1|DATitle: Structure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22807
494V8N|1|BATitle: The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-RAY DIFFRACTION3.12848
504V8N|1|DATitle: The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-RAY DIFFRACTION3.12848
514V9I|1|DATitle: Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32807
524V9I|1|BATitle: Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32807
534WT8|1|D1Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.42807
544WT8|1|C1Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.42807
555J4B|1|2ATitle: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.62789
565HD1|1|2ATitle: Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.72790
575FDU|1|2ATitle: Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92857
585F8K|1|2ATitle: Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.82856
595F8K|1|1ATitle: Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.82861
605FDU|1|1ATitle: Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92861
615HD1|1|1ATitle: Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.72746
624XEJ|1|B23STitle: IRES bound to bacterial RibosomeX-RAY DIFFRACTION3.82876
634XEJ|1|A23STitle: IRES bound to bacterial RibosomeX-RAY DIFFRACTION3.82876
644V84|1|BATitle: Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.42760
654V84|1|DATitle: Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.42760
664V83|1|DATitle: Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.52760
674V83|1|BATitle: Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.52760
684V8Q|1|AATitle: Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-RAY DIFFRACTION3.12901
694V5G|1|BATitle: The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.62901
704V5G|1|DATitle: The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.62901
714V8U|1|BATitle: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72901
724V8U|1|DATitle: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72901
734V9L|1|BATitle: 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52879
744V9L|1|DATitle: 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52879
754W29|1|BATitle: 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.X-RAY DIFFRACTION3.82879
764W29|1|DATitle: 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.X-RAY DIFFRACTION3.82879
775IMQ|1|DTitle: Structure of ribosome bound to cofactor at 3.8 angstrom resolutionELECTRON MICROSCOPY3.82889

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 1.6598 s