Equivalence class NR_4.0_41344.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4OHY|1|B (rep) | RNA (5'-R(*GP*C)-3') | C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state) | X-ray diffraction | 2 | 2014-05-14 | ||||
| 2 | 4OI1|1|B | RNA (5'-R(*GP*C)-3') | Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) | X-ray diffraction | 2.3 | 2014-05-14 | ||||
| 3 | 4OI0|1|B | RNA (5'-R(*GP*C)-3') | bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) | X-ray diffraction | 2.2 | 2014-05-14 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_41344.2 | NR_all_19905.1 | 3.0 | (1) 4OI1|1|B | (2) 4OI0|1|B, 4OHY|1|B | (0) |
| NR_4.0_41344.2 | NR_all_41344.1 | 3.0 | (2) 4OI0|1|B, 4OHY|1|B | (1) 4OI1|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_41344.2 | NR_4.0_73940.1 | 6.0 | (1) 4OHY|1|B | (2) 4OI0|1|B, 4OI1|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4OI0|1|B | Title: bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) | X-RAY DIFFRACTION | 2.2 | 2 | ||
| 2 | 4OI1|1|B | Title: Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) | X-RAY DIFFRACTION | 2.3 | 2 | ||
| 3 | 4OHY|1|B | Title: C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state) | X-RAY DIFFRACTION | 2 | 2 |
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