NR_4.0_40887.4

Members (39)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J8B\|1\|x (rep)	Transfer RNA	P-site tRNA, mRNA	Thermus thermophilus	Bacteria	RF00005	Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.6	2016-05-25
2	4V95\|1\|AV	Transfer RNA	P-site fMet-tRNA, mRNA	Thermus thermophilus	Bacteria	RF00005	Crystal structure of YAEJ bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
3	4V7J\|1\|Av	Transfer RNA	RNA (77-MER), RNA (5'-R(GPGPCPAPAPGPGPAPGPGPUPAAPAPAPAPUPGP(OMU)P(A2M)P(OMG)PAPAPAP*A)-3')	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
4	4V9B\|1\|AC	Transfer RNA	TRNA-FMET, MRNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
5	4V7J\|1\|Bv	Transfer RNA	RNA (77-MER), RNA (5'-R(GPGPCPAPAPGPGPAPGPGPUPAAPAPAPAPUPGP(OMU)P(A2M)P(OMG)PAPAPAP*A)-3')	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
6	4V9B\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
7	5E81\|1\|2K	Transfer RNA	tRNA-fMet, mRNA	Thermus thermophilus	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	2016-01-27
8	5E81\|1\|2L	Transfer RNA	tRNA-fMet, mRNA	Thermus thermophilus	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	2016-01-27
9	4V95\|1\|CV	Transfer RNA	P-site fMet-tRNA, mRNA	Thermus thermophilus	Bacteria	RF00005	Crystal structure of YAEJ bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
10	4V7K\|1\|Bv	Transfer RNA	RNA (77-MER), RNA (5'-R(AAPGPUPAPAPAPAPAPUPGPUPA(CCC))-3')	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
11	4V7K\|1\|Av	Transfer RNA	RNA (77-MER), RNA (5'-R(AAPGPUPAPAPAPAPAPUPGPUPA(CCC))-3')	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
12	4WT8\|1\|C4	Transfer RNA	P site trNA, mRNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex	X-ray diffraction	3.4	2015-01-21
13	4V9A\|1\|AC	Transfer RNA	TRNA-FMET, MRNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tetracycline.	X-ray diffraction	3.3	2014-07-09
14	4L47\|1\|XV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-ray diffraction	3.22	2014-08-06
15	4V7K\|1\|Bw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
16	4L47\|1\|QV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-ray diffraction	3.22	2014-08-06
17	4V7K\|1\|Aw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
18	4V9A\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tetracycline.	X-ray diffraction	3.3	2014-07-09
19	4V7J\|1\|Aw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
20	4V7J\|1\|Bw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
21	4V9B\|1\|CD	Transfer RNA	TRNA-FMET	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
22	4V4J\|1\|z	Transfer RNA	P-site tRNAfMET, MRNA	Thermus thermophilus	Bacteria	RF00005	Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.	X-ray diffraction	3.83	2014-07-09
23	4V9B\|1\|AD	Transfer RNA	TRNA-FMET	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
24	4V5A\|1\|AW	Transfer RNA	TRNA-FMET	Thermus thermophilus,Escherichia coli		RF00005	Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet	X-ray diffraction	3.5	2014-07-09
25	4V5A\|1\|CW	Transfer RNA	TRNA-FMET	Thermus thermophilus,Escherichia coli		RF00005	Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet	X-ray diffraction	3.5	2014-07-09
26	4V8X\|1\|AV	Transfer RNA	transfer RNA, 5'-R(GPGPCPAPAPGPGPAPGPGPUPAPAPAP APAPUPG U2M A2M A2MPAPAPAPA)-3'	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
27	4V9N\|1\|CW	Transfer RNA	P-site tRNA-fMet, messenger RNA (5'-R(APAPUPGPUPAP*G)-3')	Thermus thermophilus	Bacteria	RF00005	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-ray diffraction	3.4	2014-07-09
28	4V8X\|1\|CV	Transfer RNA	transfer RNA, BACTERIAL TOXIN YOEB	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
29	4V9N\|1\|AW	Transfer RNA	P-site tRNA-fMet, messenger RNA (5'-R(APAPUPGPUPAP*G)-3')	Thermus thermophilus	Bacteria	RF00005	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-ray diffraction	3.4	2014-07-09
30	4V8U\|1\|CW	Transfer RNA	RNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-ray diffraction	3.7	2014-07-09
31	4V8U\|1\|AW	Transfer RNA	RNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-ray diffraction	3.7	2014-07-09
32	4V8X\|1\|CW	Transfer RNA	transfer RNA	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
33	4V8X\|1\|AW	Transfer RNA	transfer RNA	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
34	6BOK\|1\|IA	Transfer RNA	16S ribosomal RNA, mRNA	Thermus thermophilus	Bacteria	RF00005	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-ray diffraction	3.55	2018-05-23
35	6BOK\|1\|LC	Transfer RNA	16S ribosomal RNA, mRNA	Thermus thermophilus	Bacteria	RF00005	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-ray diffraction	3.55	2018-05-23
36	6BOK\|1\|D	Transfer RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00005	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-ray diffraction	3.55	2018-05-23
37	6BOK\|1\|GB	Transfer RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00005	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-ray diffraction	3.55	2018-05-23
38	3J9Z\|1\|S6	Transfer RNA	P-tRNA	Thermus thermophilus	Bacteria	RF00005	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	Electron microscopy	3.6	2015-07-01
39	3JA1\|1\|S2	Transfer RNA	P/E-tRNA, mRNA	Thermus thermophilus	Bacteria	RF00005	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	Electron microscopy	3.6	2015-07-01

Release history

Release	9.16	9.17	9.18	9.19	9.20	9.21	9.22	9.23	9.24
Date	2018-11-16	2018-11-23	2018-11-30	2018-12-05	2018-12-12	2018-12-19	2018-12-26	2019-01-02	2019-01-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_40887.4	NR_4.0_40887.3	9.16	(39) 6BOK\|1\|LC, 4V5A\|1\|CW, 5E81\|1\|2L, 3JA1\|1\|S2, 4V9B\|1\|CD, 4V9A\|1\|AC, 4V8X\|1\|AW, 4V7K\|1\|Bv, 4V7J\|1\|Aw, 6BOK\|1\|D, 4L47\|1\|XV, 4V9N\|1\|CW, 4V9B\|1\|AC, 4V8X\|1\|CW, 4V8U\|1\|AW, 4V7J\|1\|Bw, 6BOK\|1\|IA, 4V5A\|1\|AW, 5E81\|1\|2K, 3J9Z\|1\|S6, 4V9B\|1\|CC, 4V95\|1\|CV, 4V8X\|1\|AV, 4V7K\|1\|Aw, 4V7J\|1\|Av, 5J8B\|1\|x, 4L47\|1\|QV, 4V9N\|1\|AW, 4V9A\|1\|CC, 4V8X\|1\|CV, 4V7K\|1\|Bw, 4V7J\|1\|Bv, 6BOK\|1\|GB, 4V4J\|1\|z, 4WT8\|1\|C4, 4V9B\|1\|AD, 4V95\|1\|AV, 4V8U\|1\|CW, 4V7K\|1\|Av	(0)	(1) 5ZLU\|1\|DD

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	3J9Z\|1\|S6	Title: Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	ELECTRON MICROSCOPY	3.6	77
2	5E81\|1\|2L	Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	72
3	6BOK\|1\|LC	Title: E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-RAY DIFFRACTION	3.55	73
4	6BOK\|1\|IA	Title: E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-RAY DIFFRACTION	3.55	73
5	5J8B\|1\|x	Title: Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.6	73
6	5E81\|1\|2K	Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	72
7	4V9B\|1\|AC	Title: Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
8	4V9A\|1\|AC	Title: Crystal Structure of the 70S ribosome with tetracycline.	X-RAY DIFFRACTION	3.3	77
9	4V9B\|1\|CC	Title: Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
10	4V9A\|1\|CC	Title: Crystal Structure of the 70S ribosome with tetracycline.	X-RAY DIFFRACTION	3.3	77
11	4WT8\|1\|C4	Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex	X-RAY DIFFRACTION	3.4	77
12	4L47\|1\|QV	Title: Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	3.22	77
13	4L47\|1\|XV	Title: Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	3.22	77
14	4V95\|1\|AV	Title: Crystal structure of YAEJ bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
15	4V7J\|1\|Av	Title: Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	76
16	4V7K\|1\|Av	Title: Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	76
17	4V7K\|1\|Bv	Title: Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	76
18	4V7J\|1\|Bv	Title: Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	76
19	4V9N\|1\|CW	Title: Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-RAY DIFFRACTION	3.4	77
20	4V9N\|1\|AW	Title: Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-RAY DIFFRACTION	3.4	77
21	4V95\|1\|CV	Title: Crystal structure of YAEJ bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
22	4V4J\|1\|z	Title: Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.	X-RAY DIFFRACTION	3.83	77
23	4V8X\|1\|CV	Title: Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	77
24	4V8X\|1\|AV	Title: Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	76
25	4V8U\|1\|AW	Title: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-RAY DIFFRACTION	3.7	76
26	4V8U\|1\|CW	Title: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-RAY DIFFRACTION	3.7	76
27	4V5A\|1\|AW	Title: Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet	X-RAY DIFFRACTION	3.5	76
28	4V5A\|1\|CW	Title: Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet	X-RAY DIFFRACTION	3.5	76
29	4V7K\|1\|Bw	Title: Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	77
30	4V7J\|1\|Bw	Title: Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	77
31	4V8X\|1\|AW	Title: Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	77
32	4V7J\|1\|Aw	Title: Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	77
33	4V8X\|1\|CW	Title: Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	77
34	4V7K\|1\|Aw	Title: Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	77
35	6BOK\|1\|D	Title: E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-RAY DIFFRACTION	3.55	73
36	6BOK\|1\|GB	Title: E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-RAY DIFFRACTION	3.55	73
37	4V9B\|1\|CD	Title: Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
38	4V9B\|1\|AD	Title: Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
39	3JA1\|1\|S2	Title: Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	ELECTRON MICROSCOPY	3.6	77

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_40887.4 Current

Release history

Parents

Children