Equivalence class NR_4.0_40355.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4PRF|1|B (rep) | Hepatitis Delta virus ribozyme | A Second Look at the HDV Ribozyme Structure and Dynamics. | X-ray diffraction | 2.39 | 2014-10-29 | ||||
| 2 | 2OJ3|1|B | HDV RIBOZYME | Hepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+) | X-ray diffraction | 2.9 | 2007-03-27 | ||||
| 3 | 1SJF|1|B | Hepatitis Delta virus ribozyme | Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solution | X-ray diffraction | 2.75 | 2004-05-18 | ||||
| 4 | 1VC0|1|B | Hepatitis Delta virus ribozyme | Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solution | X-ray diffraction | 2.5 | 2004-05-18 | ||||
| 5 | 1VC6|1|B | Hepatitis Delta virus ribozyme | Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions | X-ray diffraction | 2.8 | 2004-05-18 | ||||
| 6 | 1VBZ|1|B | Hepatitis Delta virus ribozyme | Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution | X-ray diffraction | 2.8 | 2004-05-18 | ||||
| 7 | 1SJ4|1|R | precursor form of the Hepatitis Delta virus ribozyme | Hepatitis delta virus | Viruses | Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution | X-ray diffraction | 2.7 | 2004-05-18 | ||
| 8 | 1SJ3|1|R | precursor form of the Hepatitis Delta virus ribozyme | Hepatitis delta virus | Viruses | Hepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ Bound | X-ray diffraction | 2.2 | 2004-05-18 | ||
| 9 | 2OIH|1|B | HDV ribozyme | Hepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+ | X-ray diffraction | 2.4 | 2007-03-27 | ||||
| 10 | 1VC5|1|B | Hepatitis Delta virus ribozyme | Crystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solution | X-ray diffraction | 3.4 | 2004-05-18 | ||||
| 11 | 1VBY|1|B | Hepatitis Delta virus ribozyme | Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound | X-ray diffraction | 2.9 | 2004-05-18 | ||||
| 12 | 1VBX|1|B | Hepatitis Delta virus ribozyme | Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution | X-ray diffraction | 2.7 | 2004-05-18 | ||||
| 13 | 1CX0|1|B | HDV RIBOZYME SELF-CLEAVED | HEPATITIS DELTA VIRUS RIBOZYME | X-ray diffraction | 2.3 | 1999-09-08 | ||||
| 14 | 1DRZ|1|B | RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME) | Hepatitis delta virus | Viruses | U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX | X-ray diffraction | 2.3 | 1999-02-16 | ||
| 15 | 1VC7|1|B | Hepatitis Delta virus ribozyme | Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Sr2+ solution | X-ray diffraction | 2.45 | 2004-05-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1VC5|1|B | Title: Crystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solution | X-RAY DIFFRACTION | 3.4 | 70 | ||
| 2 | 2OJ3|1|B | Title: Hepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+) | X-RAY DIFFRACTION | 2.9 | 73 | ||
| 3 | 2OIH|1|B | Title: Hepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+ | X-RAY DIFFRACTION | 2.4 | 73 | ||
| 4 | 1VBX|1|B | Title: Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution | X-RAY DIFFRACTION | 2.7 | 73 | ||
| 5 | 1SJ4|1|R | Title: Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution | X-RAY DIFFRACTION | 2.7 | 73 | ||
| 6 | 1SJ3|1|R | Title: Hepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ Bound | X-RAY DIFFRACTION | 2.2 | 73 | ||
| 7 | 1VBY|1|B | Title: Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound | X-RAY DIFFRACTION | 2.9 | 73 | ||
| 8 | 1VC7|1|B | Title: Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Sr2+ solution | X-RAY DIFFRACTION | 2.45 | 74 | ||
| 9 | 1VC0|1|B | Title: Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solution | X-RAY DIFFRACTION | 2.5 | 73 | ||
| 10 | 1VBZ|1|B | Title: Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution | X-RAY DIFFRACTION | 2.8 | 73 | ||
| 11 | 1SJF|1|B | Title: Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solution | X-RAY DIFFRACTION | 2.75 | 74 | ||
| 12 | 1VC6|1|B | Title: Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions | X-RAY DIFFRACTION | 2.8 | 72 | ||
| 13 | 1CX0|1|B | Title: HEPATITIS DELTA VIRUS RIBOZYME | X-RAY DIFFRACTION | 2.3 | 72 | ||
| 14 | 4PRF|1|B | Title: A Second Look at the HDV Ribozyme Structure and Dynamics. | X-RAY DIFFRACTION | 2.39 | 75 | ||
| 15 | 1DRZ|1|B | Title: U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX | X-RAY DIFFRACTION | 2.3 | 72 |
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