Equivalence class NR_4.0_33993.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4XNR|1|X (rep) | Purine riboswitch | Vibrio Vulnificus Adenine Riboswitch | Vibrio vulnificus | Bacteria | RF00167 | Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine | X-ray diffraction | 2.21 | 2015-05-06 |
| 2 | 4TZY|1|X | Purine riboswitch | Vibrio vulnificus Adenine Riboswitch | Vibrio vulnificus | Bacteria | RF00167 | Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+ | X-ray diffraction | 2.57 | 2014-09-10 |
| 3 | 4TZX|1|X | Purine riboswitch | Vibrio vulnificus Adenine Riboswitch | Vibrio vulnificus | Bacteria | RF00167 | Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+ | X-ray diffraction | 2.01 | 2014-09-10 |
| 4 | 5UZA|1|X | Purine riboswitch | RNA (71-MER) | Vibrio vulnificus | Bacteria | RF00167 | Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR) | X-ray diffraction | 2.22 | 2018-02-28 |
| 5 | 5SWE|1|X | Purine riboswitch | Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain | Vibrio vulnificus | Bacteria | RF00167 | Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography | X-ray diffraction | 3 | 2016-11-23 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5SWE|1|X | Title: Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography | X-RAY DIFFRACTION | 3 | 71 | ||
| 2 | 4TZX|1|X | Title: Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+ | X-RAY DIFFRACTION | 2.01 | 71 | ||
| 3 | 4TZY|1|X | Title: Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+ | X-RAY DIFFRACTION | 2.57 | 71 | ||
| 4 | 4XNR|1|X | Title: Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine | X-RAY DIFFRACTION | 2.21 | 71 | ||
| 5 | 5UZA|1|X | Title: Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR) | X-RAY DIFFRACTION | 2.22 | 69 |
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