NR_4.0_33599.1

Members (29)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4V9B\|1\|AC (rep)	Transfer RNA	TRNA-FMET, MRNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
2	4V95\|1\|AV	Transfer RNA	P-site fMet-tRNA, mRNA	Thermus thermophilus	Bacteria	RF00005	Crystal structure of YAEJ bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
3	4V8X\|1\|CV	Transfer RNA	transfer RNA, BACTERIAL TOXIN YOEB	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
4	4V9A\|1\|AC	Transfer RNA	TRNA-FMET, MRNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tetracycline.	X-ray diffraction	3.3	2014-07-09
5	4V9N\|1\|AW	Transfer RNA	P-site tRNA-fMet, messenger RNA (5'-R(APAPUPGPUPAP*G)-3')	Thermus thermophilus	Bacteria	RF00005	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-ray diffraction	3.4	2014-07-09
6	4V9N\|1\|CW	Transfer RNA	P-site tRNA-fMet, messenger RNA (5'-R(APAPUPGPUPAP*G)-3')	Thermus thermophilus	Bacteria	RF00005	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-ray diffraction	3.4	2014-07-09
7	4V8X\|1\|AV	Transfer RNA	transfer RNA, 5'-R(GPGPCPAPAPGPGPAPGPGPUPAPAPAP APAPUPG U2M A2M A2MPAPAPAPA)-3'	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
8	4V7J\|1\|Av	Transfer RNA	RNA (77-MER), RNA (5'-R(GPGPCPAPAPGPGPAPGPGPUPAAPAPAPAPUPGP(OMU)P(A2M)P(OMG)PAPAPAP*A)-3')	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
9	4V7J\|1\|Bv	Transfer RNA	RNA (77-MER), RNA (5'-R(GPGPCPAPAPGPGPAPGPGPUPAAPAPAPAPUPGP(OMU)P(A2M)P(OMG)PAPAPAP*A)-3')	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
10	4V9B\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
11	4V95\|1\|CV	Transfer RNA	P-site fMet-tRNA, mRNA	Thermus thermophilus	Bacteria	RF00005	Crystal structure of YAEJ bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
12	4V7K\|1\|Bv	Transfer RNA	RNA (77-MER), RNA (5'-R(AAPGPUPAPAPAPAPAPUPGPUPA(CCC))-3')	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
13	4V9A\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tetracycline.	X-ray diffraction	3.3	2014-07-09
14	4L47\|1\|QV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-ray diffraction	3.22	2014-08-06
15	4L47\|1\|XV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-ray diffraction	3.22	2014-08-06
16	4V7K\|1\|Av	Transfer RNA	RNA (77-MER), RNA (5'-R(AAPGPUPAPAPAPAPAPUPGPUPA(CCC))-3')	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
17	4V8U\|1\|AW	Transfer RNA	RNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-ray diffraction	3.7	2014-07-09
18	4V8U\|1\|CW	Transfer RNA	RNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-ray diffraction	3.7	2014-07-09
19	4V4J\|1\|z	Transfer RNA	P-site tRNAfMET, MRNA	Thermus thermophilus	Bacteria	RF00005	Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.	X-ray diffraction	3.83	2014-07-09
20	4V9B\|1\|AD	Transfer RNA	TRNA-FMET	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
21	4V7K\|1\|Bw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
22	4V8X\|1\|CW	Transfer RNA	transfer RNA	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
23	4V5A\|1\|AW	Transfer RNA	TRNA-FMET	Thermus thermophilus,Escherichia coli		RF00005	Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet	X-ray diffraction	3.5	2014-07-09
24	4V7K\|1\|Aw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
25	4V8X\|1\|AW	Transfer RNA	transfer RNA	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
26	4V7J\|1\|Bw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
27	4V7J\|1\|Aw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
28	4V5A\|1\|CW	Transfer RNA	TRNA-FMET	Thermus thermophilus,Escherichia coli		RF00005	Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet	X-ray diffraction	3.5	2014-07-09
29	4V9B\|1\|CD	Transfer RNA	TRNA-FMET	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09

Release history

Release	2.0
Date	2014-12-05

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V9B\|1\|AC	Title: Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
2	4V9A\|1\|AC	Title: Crystal Structure of the 70S ribosome with tetracycline.	X-RAY DIFFRACTION	3.3	77
3	4V9B\|1\|CC	Title: Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
4	4V9A\|1\|CC	Title: Crystal Structure of the 70S ribosome with tetracycline.	X-RAY DIFFRACTION	3.3	77
5	4V95\|1\|CV	Title: Crystal structure of YAEJ bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
6	4L47\|1\|QV	Title: Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	3.22	77
7	4L47\|1\|XV	Title: Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	3.22	77
8	4V95\|1\|AV	Title: Crystal structure of YAEJ bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
9	4V7J\|1\|Av	Title: Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	76
10	4V7K\|1\|Av	Title: Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	76
11	4V7K\|1\|Bv	Title: Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	76
12	4V7J\|1\|Bv	Title: Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	76
13	4V9N\|1\|CW	Title: Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-RAY DIFFRACTION	3.4	77
14	4V9N\|1\|AW	Title: Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-RAY DIFFRACTION	3.4	77
15	4V8X\|1\|CV	Title: Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	77
16	4V8X\|1\|AV	Title: Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	76
17	4V4J\|1\|z	Title: Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.	X-RAY DIFFRACTION	3.83	77
18	4V8U\|1\|AW	Title: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-RAY DIFFRACTION	3.7	76
19	4V8U\|1\|CW	Title: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-RAY DIFFRACTION	3.7	76
20	4V5A\|1\|AW	Title: Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet	X-RAY DIFFRACTION	3.5	76
21	4V5A\|1\|CW	Title: Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet	X-RAY DIFFRACTION	3.5	76
22	4V7K\|1\|Aw	Title: Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	77
23	4V8X\|1\|AW	Title: Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	77
24	4V7J\|1\|Aw	Title: Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	77
25	4V8X\|1\|CW	Title: Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	77
26	4V7J\|1\|Bw	Title: Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	77
27	4V7K\|1\|Bw	Title: Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	77
28	4V9B\|1\|CD	Title: Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
29	4V9B\|1\|AD	Title: Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_33599.1 Obsolete

Release history

Parents

Children