Equivalence class NR_4.0_30991.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2FQN|1|A+ 2FQN|1|B (rep) | 5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3' | Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site | X-ray diffraction | 2.3 | 2006-02-14 | ||||
| 2 | 2O3Y|1|A+ 2O3Y|1|B | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in Presence of Paromamine Derivative NB30 | X-ray diffraction | 2.7 | 2007-11-06 | ||||
| 3 | 2G5K|1|A+ 2G5K|1|B | 5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3' | Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with Apramycin | X-ray diffraction | 2.8 | 2006-06-20 | ||||
| 4 | 2O3W|1|A+ 2O3W|1|B | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in presence of paromomycin | X-ray diffraction | 2.8 | 2007-11-06 |
Release history
| Release | 5.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_30991.1 | NR_all_33419.1 | 5.0 | (4) 2O3W|1|A+2O3W|1|B, 2O3Y|1|A+2O3Y|1|B, 2FQN|1|A+2FQN|1|B, 2G5K|1|A+2G5K|1|B | (0) | (35) 2O3V|1|A+2O3V|1|B, 1YRJ|1|A+1YRJ|1|B, 3BNS|1|A+3BNS|1|B, 5BXK|1|A+5BXK|1|B, 3BNQ|1|C+3BNQ|1|D, 5BWS|1|A+5BWS|1|B, 2O3X|1|A+2O3X|1|B, 4WCQ|1|A+4WCQ|1|B, 2ESI|1|A+2ESI|1|B, 5BXK|1|C+5BXK|1|D, 4PDQ|1|A+4PDQ|1|B, 1LC4|1|A+1LC4|1|B, 4P3U|1|B+4P3U|1|A, 5BWS|1|C+5BWS|1|D, 4WCR|1|A+4WCR|1|B, 4P3S|1|B+4P3S|1|A, 4K31|1|B+4K31|1|C, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4P3U|1|C+4P3U|1|D, 4GPX|1|A+4GPX|1|B, 3TD1|1|B+3TD1|1|A, 4P3T|1|A+4P3T|1|B, 4K32|1|A+4K32|1|B, 3BNS|1|C+3BNS|1|D, 3BNR|1|A+3BNR|1|B, 4GPY|1|A+4GPY|1|B, 3WRU|1|A+3WRU|1|B, 3BNQ|1|A+3BNQ|1|B, 2F4T|1|B+2F4T|1|A, 3TD0|1|B+3TD0|1|A, 3BNR|1|C+3BNR|1|D, 4WCS|1|A+4WCS|1|B, 4P43|1|B+4P43|1|A, 4P20|1|A+4P20|1|B, 4GPW|1|A+4GPW|1|B |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_30991.1 | NR_4.0_18460.1 | 6.0 | (1) 2FQN|1|A+2FQN|1|B | (3) 2G5K|1|A+2G5K|1|B, 2O3W|1|A+2O3W|1|B, 2O3Y|1|A+2O3Y|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2O3Y|1|A+2O3Y|1|B | Title: Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in Presence of Paromamine Derivative NB30 | X-RAY DIFFRACTION | 2.7 | 22 | ||
| 2 | 2FQN|1|A+2FQN|1|B | Title: Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site | X-RAY DIFFRACTION | 2.3 | 22 | ||
| 3 | 2O3W|1|A+2O3W|1|B | Title: Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in presence of paromomycin | X-RAY DIFFRACTION | 2.8 | 22 | ||
| 4 | 2G5K|1|A+2G5K|1|B | Title: Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with Apramycin | X-RAY DIFFRACTION | 2.8 | 22 |
Coloring options: