Equivalence class NR_4.0_30026.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5HN2|1|B+ 5HN2|1|A (rep) | RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3') | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 1.5 | 2016-04-27 | ||
| 2 | 5HNJ|1|A+ 5HNJ|1|B | RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3') | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 1.24 | 2016-04-27 | ||
| 3 | 5HNQ|1|A+ 5HNQ|1|B | 5fC modified RNA | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 2.4 | 2016-04-27 | ||
| 4 | 5HNQ|1|C+ 5HNQ|1|D | 5fC modified RNA | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 2.4 | 2016-04-27 | ||
| 5 | 5HNJ|1|C+ 5HNJ|1|D | RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3') | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 1.24 | 2016-04-27 | ||
| 6 | 5HN2|1|C+ 5HN2|1|D | RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3') | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 1.5 | 2016-04-27 | ||
| 7 | 5HNQ|1|E+ 5HNQ|1|F | 5fC modified RNA | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 2.4 | 2016-04-27 | ||
| 8 | 5HN2|1|E+ 5HN2|1|F | RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3') | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 1.5 | 2016-04-27 | ||
| 9 | 5HNJ|1|E+ 5HNJ|1|F | RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3') | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 1.24 | 2016-04-27 | ||
| 10 | 5HNQ|1|G+ 5HNQ|1|H | 5fC modified RNA | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 2.4 | 2016-04-27 | ||
| 11 | 5HNQ|1|I+ 5HNQ|1|J | 5fC modified RNA | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 2.4 | 2016-04-27 | ||
| 12 | 5HNQ|1|K+ 5HNQ|1|L | 5fC modified RNA | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 2.4 | 2016-04-27 | ||
| 13 | 5HNQ|1|M | 5fC modified RNA | synthetic construct | Synthetic | Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-ray diffraction | 2.4 | 2016-04-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_30026.1 | NR_4.0_71741.1 | 6.0 | (3) 5HN2|1|B+5HN2|1|A, 5HN2|1|E+5HN2|1|F, 5HN2|1|C+5HN2|1|D | (10) 5HNQ|1|K+5HNQ|1|L, 5HNQ|1|C+5HNQ|1|D, 5HNJ|1|C+5HNJ|1|D, 5HNQ|1|I+5HNQ|1|J, 5HNJ|1|A+5HNJ|1|B, 5HNQ|1|G+5HNQ|1|H, 5HNQ|1|A+5HNQ|1|B, 5HNQ|1|M, 5HNJ|1|E+5HNJ|1|F, 5HNQ|1|E+5HNQ|1|F | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5HNQ|1|C+5HNQ|1|D | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 2.4 | 7 | ||
| 2 | 5HNQ|1|E+5HNQ|1|F | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 2.4 | 7 | ||
| 3 | 5HNQ|1|A+5HNQ|1|B | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 2.4 | 7 | ||
| 4 | 5HNQ|1|I+5HNQ|1|J | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 2.4 | 7 | ||
| 5 | 5HN2|1|C+5HN2|1|D | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 1.5 | 7 | ||
| 6 | 5HNJ|1|A+5HNJ|1|B | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 1.24 | 7 | ||
| 7 | 5HN2|1|E+5HN2|1|F | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 1.5 | 7 | ||
| 8 | 5HNJ|1|E+5HNJ|1|F | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 1.24 | 7 | ||
| 9 | 5HNQ|1|M | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 2.4 | 7 | ||
| 10 | 5HNQ|1|G+5HNQ|1|H | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 2.4 | 7 | ||
| 11 | 5HNQ|1|K+5HNQ|1|L | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 2.4 | 7 | ||
| 12 | 5HN2|1|B+5HN2|1|A | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 1.5 | 9 | ||
| 13 | 5HNJ|1|C+5HNJ|1|D | Title: Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex | X-RAY DIFFRACTION | 1.24 | 7 |
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