Equivalence class NR_4.0_29981.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5E7K|1|1K (rep) | Transfer RNA | tRNALys, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-ray diffraction | 3.2 | 2016-01-27 |
| 2 | 5JTE|1|AW | Transfer RNA | A-site Lysine tRNA Lysine, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA | Electron microscopy | 3.6 | 2016-07-20 |
| 3 | 5E81|1|1K | Transfer RNA | tRNA-Lys, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-ray diffraction | 2.95 | 2016-01-27 |
| 4 | 5IB8|1|1K | Transfer RNA | tRNALys, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site | X-ray diffraction | 3.13 | 2016-05-25 |
| 5 | 5EL6|1|1L | Transfer RNA | tRNALys, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-ray diffraction | 3.1 | 2016-01-27 |
| 6 | 5E7K|1|1L | Transfer RNA | tRNALys, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-ray diffraction | 3.2 | 2016-01-27 |
| 7 | 5E81|1|1L | Transfer RNA | tRNA-Lys, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-ray diffraction | 2.95 | 2016-01-27 |
| 8 | 5EL4|1|1K | Transfer RNA | tRNA-Lys, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-ray diffraction | 3.15 | 2016-01-27 |
| 9 | 5EL4|1|1L | Transfer RNA | tRNA-Lys, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-ray diffraction | 3.15 | 2016-01-27 |
| 10 | 5EL6|1|1K | Transfer RNA | tRNALys, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-ray diffraction | 3.1 | 2016-01-27 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_29981.1 | NR_4.0_48617.1 | 7.0 | (10) 5E81|1|1L, 5EL4|1|1L, 5IB8|1|1K, 5E7K|1|1K, 5E81|1|1K, 5EL6|1|1L, 5EL4|1|1K, 5JTE|1|AW, 5E7K|1|1L, 5EL6|1|1K | (0) | (6) 5EL5|1|1K, 5IB7|1|1K, 5EL7|1|1K, 5IB7|1|1L, 5EL7|1|1L, 5EL5|1|1L |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5EL6|1|1L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.1 | 68 | ||
| 2 | 5EL4|1|1L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-RAY DIFFRACTION | 3.15 | 72 | ||
| 3 | 5E7K|1|1L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-RAY DIFFRACTION | 3.2 | 68 | ||
| 4 | 5E81|1|1L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 64 | ||
| 5 | 5IB8|1|1K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site | X-RAY DIFFRACTION | 3.13 | 66 | ||
| 6 | 5E81|1|1K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 67 | ||
| 7 | 5EL4|1|1K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position | X-RAY DIFFRACTION | 3.15 | 64 | ||
| 8 | 5E7K|1|1K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site | X-RAY DIFFRACTION | 3.2 | 66 | ||
| 9 | 5JTE|1|AW | Title: Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA | ELECTRON MICROSCOPY | 3.6 | 66 | ||
| 10 | 5EL6|1|1K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin | X-RAY DIFFRACTION | 3.1 | 64 |
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