Equivalence class NR_4.0_29777.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5J4B|1|2v (rep) | mRNA | synthetic construct | Synthetic | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 | ||
| 2 | 5J4B|1|1v | mRNA | synthetic construct | Synthetic | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 | ||
| 3 | 5J4C|1|1v | mRNA | synthetic construct | Synthetic | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 | ||
| 4 | 5J4C|1|2v | mRNA | synthetic construct | Synthetic | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 | ||
| 5 | 5HAU|1|1y | mRNA | Escherichia virus T4 | Viruses | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3 | 2016-04-06 | ||
| 6 | 5HCP|1|2v | mRNA | Escherichia virus T4 | Viruses | Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.89 | 2016-04-06 | ||
| 7 | 5HCQ|1|2v | mRNA | Escherichia virus T4 | Viruses | Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 | ||
| 8 | 5HD1|1|2v | mRNA | Escherichia virus T4 | Viruses | Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.7 | 2016-04-06 | ||
| 9 | 5HCR|1|2v | mRNA | Escherichia virus T4 | Viruses | Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.8 | 2016-04-06 | ||
| 10 | 5HAU|1|2y | mRNA | Escherichia virus T4 | Viruses | Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 3 | 2016-04-06 |
Release history
| Release | 5.0 |
|---|---|
| Date | 2016-07-25 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_29777.3 | NR_4.0_12812.1 | 6.0 | (1) 5HD1|1|2v | (9) 5HCP|1|2v, 5J4B|1|2v, 5HAU|1|2y, 5J4B|1|1v, 5J4C|1|2v, 5HAU|1|1y, 5HCR|1|2v, 5J4C|1|1v, 5HCQ|1|2v | (0) |
| NR_4.0_29777.3 | NR_4.0_99416.1 | 6.0 | (2) 5J4B|1|1v, 5J4B|1|2v | (8) 5HAU|1|2y, 5HD1|1|2v, 5HAU|1|1y, 5HCR|1|2v, 5HCQ|1|2v, 5J4C|1|2v, 5HCP|1|2v, 5J4C|1|1v | (2) 5DOY|1|1v, 5DOY|1|2v |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5J4C|1|1v | Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 13 | ||
| 2 | 5J4B|1|1v | Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 13 | ||
| 3 | 5J4B|1|2v | Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 13 | ||
| 4 | 5J4C|1|2v | Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 13 | ||
| 5 | 5HAU|1|2y | Title: Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3 | 5 | ||
| 6 | 5HAU|1|1y | Title: Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 3 | 6 | ||
| 7 | 5HCP|1|2v | Title: Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.89 | 5 | ||
| 8 | 5HD1|1|2v | Title: Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.7 | 5 | ||
| 9 | 5HCR|1|2v | Title: Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 5 | ||
| 10 | 5HCQ|1|2v | Title: Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.8 | 5 |
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