Equivalence class NR_4.0_23371.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5C0Y|1|D (rep) | poly U RNA | synthetic construct | Synthetic | Crystal structure of the Rrp6 catalytic domain bound to poly(U) RNA | X-ray diffraction | 2.1 | 2015-08-05 | ||
| 2 | 5C0Y|1|C | poly U RNA | synthetic construct | Synthetic | Crystal structure of the Rrp6 catalytic domain bound to poly(U) RNA | X-ray diffraction | 2.1 | 2015-08-05 | ||
| 3 | 2XB2|1|E | RNA POLY-U-RIBONUCLEOTIDE | synthetic construct | Synthetic | Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machinery | X-ray diffraction | 3.4 | 2010-05-12 | ||
| 4 | 2XB2|1|R | RNA POLY-U-RIBONUCLEOTIDE | synthetic construct | Synthetic | Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machinery | X-ray diffraction | 3.4 | 2010-05-12 | ||
| 5 | 2J0Q|1|E | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | The crystal structure of the Exon Junction Complex at 3.2 A resolution | X-ray diffraction | 3.2 | 2006-08-30 | ||||
| 6 | 2J0S|1|E | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP *UP*UP*UP*UP*U)-3' | The crystal structure of the Exon Junction Complex at 2.2 A resolution | X-ray diffraction | 2.21 | 2006-09-06 | ||||
| 7 | 2J0Q|1|H | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | The crystal structure of the Exon Junction Complex at 3.2 A resolution | X-ray diffraction | 3.2 | 2006-08-30 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_23371.1 | NR_all_10282.1 | 4.0 | (1) 5C0Y|1|C | (6) 5C0Y|1|D, 2XB2|1|R, 2XB2|1|E, 2J0S|1|E, 2J0Q|1|H, 2J0Q|1|E | (0) |
| NR_4.0_23371.1 | NR_all_15410.1 | 4.0 | (1) 2XB2|1|E | (6) 5C0Y|1|D, 5C0Y|1|C, 2XB2|1|R, 2J0S|1|E, 2J0Q|1|H, 2J0Q|1|E | (0) |
| NR_4.0_23371.1 | NR_all_45480.1 | 4.0 | (3) 2J0S|1|E, 2J0Q|1|H, 2J0Q|1|E | (4) 5C0Y|1|D, 5C0Y|1|C, 2XB2|1|R, 2XB2|1|E | (0) |
| NR_4.0_23371.1 | NR_all_63334.1 | 4.0 | (1) 2XB2|1|R | (6) 2J0S|1|E, 2J0Q|1|H, 2J0Q|1|E, 5C0Y|1|D, 5C0Y|1|C, 2XB2|1|E | (0) |
| NR_4.0_23371.1 | NR_all_96782.1 | 4.0 | (1) 5C0Y|1|D | (6) 5C0Y|1|C, 2XB2|1|R, 2XB2|1|E, 2J0S|1|E, 2J0Q|1|H, 2J0Q|1|E | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2J0Q|1|E | Title: The crystal structure of the Exon Junction Complex at 3.2 A resolution | X-RAY DIFFRACTION | 3.2 | 6 | ||
| 2 | 2J0S|1|E | Title: The crystal structure of the Exon Junction Complex at 2.2 A resolution | X-RAY DIFFRACTION | 2.21 | 6 | ||
| 3 | 2J0Q|1|H | Title: The crystal structure of the Exon Junction Complex at 3.2 A resolution | X-RAY DIFFRACTION | 3.2 | 6 | ||
| 4 | 2XB2|1|E | Title: Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machinery | X-RAY DIFFRACTION | 3.4 | 8 | ||
| 5 | 2XB2|1|R | Title: Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machinery | X-RAY DIFFRACTION | 3.4 | 7 | ||
| 6 | 5C0Y|1|D | Title: Crystal structure of the Rrp6 catalytic domain bound to poly(U) RNA | X-RAY DIFFRACTION | 2.1 | 9 | ||
| 7 | 5C0Y|1|C | Title: Crystal structure of the Rrp6 catalytic domain bound to poly(U) RNA | X-RAY DIFFRACTION | 2.1 | 5 |
Coloring options: