Equivalence class NR_4.0_22108.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FQ5|1|A (rep) | Single-Guide RNA | SGRNA | synthetic construct | Synthetic | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-ray diffraction | 2.14 | 2016-03-23 | |
| 2 | 5FW2|1|A | Single-Guide RNA | SGRNA | synthetic construct | Synthetic | Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA | X-ray diffraction | 2.68 | 2016-06-15 | |
| 3 | 5VW1|1|C | Single-Guide RNA | sgRNA | Listeria monocytogenes | Bacteria | Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex | X-ray diffraction | 2.6 | 2017-06-28 | |
| 4 | 4UN4|1|A | Single-Guide RNA | SGRNA | synthetic construct | Synthetic | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-ray diffraction | 2.37 | 2014-07-23 | |
| 5 | 4UN5|1|A | Single-Guide RNA | SGRNA | synthetic construct | Synthetic | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-ray diffraction | 2.4 | 2014-07-23 | |
| 6 | 5FW3|1|A | Single-Guide RNA | SGRNA | synthetic construct | Synthetic | Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA | X-ray diffraction | 2.7 | 2016-06-15 | |
| 7 | 4UN3|1|A | Single-Guide RNA | SGRNA | synthetic construct | Synthetic | Crystal structure of Cas9 bound to PAM-containing DNA target | X-ray diffraction | 2.59 | 2014-07-23 | |
| 8 | 5FW1|1|A | Single-Guide RNA | SGRNA | synthetic construct | Synthetic | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-ray diffraction | 2.5 | 2016-04-20 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4UN5|1|A | Title: Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-RAY DIFFRACTION | 2.4 | 82 | ||
| 2 | 5FQ5|1|A | Title: Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-RAY DIFFRACTION | 2.14 | 83 | ||
| 3 | 4UN4|1|A | Title: Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-RAY DIFFRACTION | 2.37 | 82 | ||
| 4 | 5FW1|1|A | Title: Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-RAY DIFFRACTION | 2.5 | 81 | ||
| 5 | 5FW3|1|A | Title: Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA | X-RAY DIFFRACTION | 2.7 | 81 | ||
| 6 | 5FW2|1|A | Title: Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA | X-RAY DIFFRACTION | 2.68 | 81 | ||
| 7 | 4UN3|1|A | Title: Crystal structure of Cas9 bound to PAM-containing DNA target | X-RAY DIFFRACTION | 2.59 | 81 | ||
| 8 | 5VW1|1|C | Title: Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex | X-RAY DIFFRACTION | 2.6 | 73 |
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