Equivalence class NR_4.0_20328.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6CB3|1|B (rep) | RNA (99-MER) | Lactococcus lactis | Bacteria | Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium | X-ray diffraction | 1.89 | 2018-06-13 | ||
| 2 | 6CB3|1|A | RNA (99-MER) | Lactococcus lactis | Bacteria | Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium | X-ray diffraction | 1.89 | 2018-06-13 | ||
| 3 | 4Y1J|1|A | yybP-ykoY riboswitch | Lactococcus lactis | Bacteria | Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+ | X-ray diffraction | 2.24 | 2015-04-08 | ||
| 4 | 4Y1J|1|B | yybP-ykoY riboswitch | Lactococcus lactis | Bacteria | Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+ | X-ray diffraction | 2.24 | 2015-04-08 | ||
| 5 | 6CC3|1|A | yybP-ykoY manganese riboswitch | RNA (101-MER) | Lactococcus lactis | Bacteria | RF00080 | Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium | X-ray diffraction | 2.7 | 2018-06-13 |
| 6 | 4Y1I|1|A | Lactococcus lactis yybP-ykoY riboswitch | Lactococcus lactis | Bacteria | Lactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+ | X-ray diffraction | 2.85 | 2015-04-08 | ||
| 7 | 4Y1I|1|B | Lactococcus lactis yybP-ykoY riboswitch | Lactococcus lactis | Bacteria | Lactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+ | X-ray diffraction | 2.85 | 2015-04-08 | ||
| 8 | 6CC3|1|B | yybP-ykoY manganese riboswitch | RNA (101-MER) | Lactococcus lactis | Bacteria | RF00080 | Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium | X-ray diffraction | 2.7 | 2018-06-13 |
| 9 | 6CC1|1|B | yybP-ykoY manganese riboswitch | RNA (94-MER) | Lactococcus lactis | Bacteria | RF00080 | Crystal structure of ykoY-alx riboswitch chimera bound to cadmium | X-ray diffraction | 2.54 | 2018-06-13 |
| 10 | 6CC1|1|A | yybP-ykoY manganese riboswitch | RNA (94-MER) | Lactococcus lactis | Bacteria | RF00080 | Crystal structure of ykoY-alx riboswitch chimera bound to cadmium | X-ray diffraction | 2.54 | 2018-06-13 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_20328.1 | NR_4.0_43654.1 | 9.16 | (4) 4Y1J|1|B, 4Y1J|1|A, 4Y1I|1|B, 4Y1I|1|A | (6) 6CC3|1|B, 6CC3|1|A, 6CC1|1|B, 6CC1|1|A, 6CB3|1|B, 6CB3|1|A | (0) |
| NR_4.0_20328.1 | NR_4.0_61314.1 | 9.16 | (6) 6CB3|1|A, 6CC3|1|B, 6CC3|1|A, 6CC1|1|B, 6CC1|1|A, 6CB3|1|B | (4) 4Y1J|1|A, 4Y1I|1|B, 4Y1I|1|A, 4Y1J|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4Y1J|1|B | Title: Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+ | X-RAY DIFFRACTION | 2.24 | 100 | ||
| 2 | 4Y1J|1|A | Title: Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+ | X-RAY DIFFRACTION | 2.24 | 100 | ||
| 3 | 6CB3|1|A | Title: Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium | X-RAY DIFFRACTION | 1.89 | 99 | ||
| 4 | 6CC1|1|A | Title: Crystal structure of ykoY-alx riboswitch chimera bound to cadmium | X-RAY DIFFRACTION | 2.54 | 94 | ||
| 5 | 6CC1|1|B | Title: Crystal structure of ykoY-alx riboswitch chimera bound to cadmium | X-RAY DIFFRACTION | 2.54 | 100 | ||
| 6 | 6CB3|1|B | Title: Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium | X-RAY DIFFRACTION | 1.89 | 99 | ||
| 7 | 4Y1I|1|B | Title: Lactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+ | X-RAY DIFFRACTION | 2.85 | 100 | ||
| 8 | 4Y1I|1|A | Title: Lactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+ | X-RAY DIFFRACTION | 2.85 | 100 | ||
| 9 | 6CC3|1|B | Title: Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium | X-RAY DIFFRACTION | 2.7 | 92 | ||
| 10 | 6CC3|1|A | Title: Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium | X-RAY DIFFRACTION | 2.7 | 100 |
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