Equivalence class NR_4.0_19638.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2VQE|1|Y+ 2VQE|1|X (rep) | 5'-R(*GP*CP*AP*UP*GP*CP*UP*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*CP)-3', 5'-R(*UP*UP*AP*AP*AP*AP)-3' | Thermus thermophilus | Bacteria | Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding | X-ray diffraction | 2.5 | 2008-04-29 | ||
| 2 | 2VQF|1|Y+ 2VQF|1|X | 5'-R(*GP*CP*AP*UP*GP*CP*U*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*C)-3', 5'-R(*UP*UP*GP*AP*AP*AP)-3' | Thermus thermophilus | Bacteria | Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding | X-ray diffraction | 2.9 | 2008-04-29 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_19638.1 | NR_4.0_12055.1 | 6.0 | (1) 2VQE|1|Y+2VQE|1|X | (1) 2VQF|1|Y+2VQF|1|X | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2VQE|1|Y+2VQE|1|X | Title: Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding | X-RAY DIFFRACTION | 2.5 | 6 | ||
| 2 | 2VQF|1|Y+2VQF|1|X | Title: Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding | X-RAY DIFFRACTION | 2.9 | 6 |
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