Equivalence class NR_4.0_19566.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V9B|1|AC (rep) | Transfer RNA | TRNA-FMET, MRNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of the 70S ribosome with tigecycline. | X-ray diffraction | 3.1 | 2014-07-09 |
| 2 | 4V9B|1|CC | Transfer RNA | TRNA-FMET, MRNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of the 70S ribosome with tigecycline. | X-ray diffraction | 3.1 | 2014-07-09 |
| 3 | 5E81|1|2L | Transfer RNA | tRNA-fMet, mRNA | Thermus thermophilus | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-ray diffraction | 2.95 | 2016-01-27 |
| 4 | 5E81|1|2K | Transfer RNA | tRNA-fMet, mRNA | Thermus thermophilus | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-ray diffraction | 2.95 | 2016-01-27 |
| 5 | 4WT8|1|C4 | Transfer RNA | P site trNA, mRNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-ray diffraction | 3.4 | 2015-01-21 |
| 6 | 4V8U|1|CW | Transfer RNA | RNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-ray diffraction | 3.7 | 2014-07-09 |
| 7 | 4V8U|1|AW | Transfer RNA | RNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-ray diffraction | 3.7 | 2014-07-09 |
| 8 | 4V4J|1|z | Transfer RNA | P-site tRNAfMET, MRNA | Thermus thermophilus | Bacteria | RF00005 | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | X-ray diffraction | 3.83 | 2014-07-09 |
| 9 | 4V9B|1|AD | Transfer RNA | TRNA-FMET | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of the 70S ribosome with tigecycline. | X-ray diffraction | 3.1 | 2014-07-09 |
| 10 | 4V9B|1|CD | Transfer RNA | TRNA-FMET | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of the 70S ribosome with tigecycline. | X-ray diffraction | 3.1 | 2014-07-09 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_19566.1 | NR_4.0_33599.2 | 6.0 | (10) 4V9B|1|CC, 4V8U|1|AW, 5E81|1|2L, 4V9B|1|CD, 4V8U|1|CW, 4V9B|1|AC, 4V4J|1|z, 5E81|1|2K, 4WT8|1|C4, 4V9B|1|AD | (0) | (25) 4L47|1|XV, 4V7J|1|Aw, 4V7J|1|Bw, 4V7K|1|Av, 4V8X|1|AV, 4V9A|1|CC, 3J9Z|1|S6, 4L47|1|QV, 4V5A|1|AW, 4V5A|1|CW, 4V7K|1|Bv, 4V8X|1|CV, 4V9N|1|AW, 4V9N|1|CW, 5J8B|1|x, 4V7K|1|Aw, 4V8X|1|CW, 4V95|1|AV, 4V9A|1|AC, 4V7J|1|Av, 4V7K|1|Bw, 4V95|1|CV, 4V8X|1|AW, 3JA1|1|S2, 4V7J|1|Bv |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_19566.1 | NR_4.0_40887.1 | 7.0 | (10) 5E81|1|2L, 4V9B|1|CC, 4V8U|1|CW, 4V9B|1|CD, 4V9B|1|AC, 4V4J|1|z, 4WT8|1|C4, 4V9B|1|AD, 4V8U|1|AW, 5E81|1|2K | (0) | (25) 3JA1|1|S2, 4V9A|1|AC, 4V8X|1|AW, 4V8X|1|CW, 4V7K|1|Aw, 4V7J|1|Av, 4L47|1|XV, 4V9N|1|AW, 4V95|1|CV, 4V7K|1|Bw, 4V7J|1|Bv, 4V7K|1|Av, 4V5A|1|AW, 5J8B|1|x, 3J9Z|1|S6, 4V8X|1|AV, 4V8X|1|CV, 4V5A|1|CW, 4L47|1|QV, 4V9A|1|CC, 4V95|1|AV, 4V7K|1|Bv, 4V7J|1|Aw, 4V7J|1|Bw, 4V9N|1|CW |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4V9B|1|CD | Title: Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 | ||
| 2 | 4V9B|1|AD | Title: Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 | ||
| 3 | 4V8U|1|CW | Title: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 | ||
| 4 | 4V8U|1|AW | Title: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 | ||
| 5 | 4V4J|1|z | Title: Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | X-RAY DIFFRACTION | 3.83 | 77 | ||
| 6 | 4V9B|1|CC | Title: Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 | ||
| 7 | 4WT8|1|C4 | Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 77 | ||
| 8 | 5E81|1|2L | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 72 | ||
| 9 | 4V9B|1|AC | Title: Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 | ||
| 10 | 5E81|1|2K | Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 72 |
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