Equivalence class NR_4.0_19472.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1U6B|1|B (rep) | 197-MER, 5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*GP*AP*CP*GP *GP*CP*C)-3', 5'-R(*CP*AP*(5MU))-3' | CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS | X-ray diffraction | 3.1 | 2004-08-10 | ||||
| 2 | 3BO2|1|B | Group I intron P9, RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*G)-3'), RNA (5'-R(*AP*CP*GP*GP*CP*C)-3'), RNA (5'-R(*CP*AP*U)-3') | synthetic construct | Synthetic | A relaxed active site following exon ligation by a group I intron | X-ray diffraction | 3.31 | 2008-04-01 | ||
| 3 | 3BO3|1|B | Group I intron P9, RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*G)-3'), RNA (5'-R(*CP*AP*UP*AP*CP*GP*GP*CP*C)-3') | synthetic construct | Synthetic | A relaxed active site following exon ligation by a group I intron | X-ray diffraction | 3.4 | 2008-04-01 | ||
| 4 | 3BO4|1|B | Group I intron P9 | synthetic construct | Synthetic | A relaxed active site following exon ligation by a group I intron | X-ray diffraction | 3.33 | 2008-04-01 | ||
| 5 | 1ZZN|1|B | 197-MER, 5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*GP*AP*CP*GP*GP*CP*C)-3', 5'-R(*CP*AP*(5MU))-3' | Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands. | X-ray diffraction | 3.37 | 2005-08-30 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1ZZN|1|B | Title: Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands. | X-RAY DIFFRACTION | 3.37 | 195 | ||
| 2 | 3BO3|1|B | Title: A relaxed active site following exon ligation by a group I intron | X-RAY DIFFRACTION | 3.4 | 195 | ||
| 3 | 1U6B|1|B | Title: CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS | X-RAY DIFFRACTION | 3.1 | 195 | ||
| 4 | 3BO4|1|B | Title: A relaxed active site following exon ligation by a group I intron | X-RAY DIFFRACTION | 3.33 | 195 | ||
| 5 | 3BO2|1|B | Title: A relaxed active site following exon ligation by a group I intron | X-RAY DIFFRACTION | 3.31 | 195 |
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