Equivalence class NR_4.0_17671.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2NVQ|1|R (rep) | 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3' | synthetic construct | Synthetic | RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP | X-ray diffraction | 2.9 | 2006-12-12 | ||
| 2 | 2YU9|1|R | 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3' | RNA polymerase II elongation complex in 150 mm MG+2 with UTP | X-ray diffraction | 3.4 | 2007-04-24 | ||||
| 3 | 2E2I|1|R | 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3' | RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP | X-ray diffraction | 3.41 | 2006-12-19 | ||||
| 4 | 1R9T|1|R | RNA strand | RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE | X-ray diffraction | 3.5 | 2004-11-16 | ||||
| 5 | 2NVX|1|R | 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3' | RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP | X-ray diffraction | 3.6 | 2006-12-19 | ||||
| 6 | 1SFO|1|R | RNA STRAND | RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX | X-ray diffraction | 3.61 | 2004-03-02 | ||||
| 7 | 2E2H|1|R | 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3' | RNA polymerase II elongation complex at 5 mM Mg2+ with GTP | X-ray diffraction | 3.95 | 2006-12-12 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2E2H|1|R | Title: RNA polymerase II elongation complex at 5 mM Mg2+ with GTP | X-RAY DIFFRACTION | 3.95 | 10 | ||
| 2 | 2NVQ|1|R | Title: RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP | X-RAY DIFFRACTION | 2.9 | 10 | ||
| 3 | 2E2I|1|R | Title: RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP | X-RAY DIFFRACTION | 3.41 | 10 | ||
| 4 | 2YU9|1|R | Title: RNA polymerase II elongation complex in 150 mm MG+2 with UTP | X-RAY DIFFRACTION | 3.4 | 10 | ||
| 5 | 2NVX|1|R | Title: RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP | X-RAY DIFFRACTION | 3.6 | 10 | ||
| 6 | 1SFO|1|R | Title: RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX | X-RAY DIFFRACTION | 3.61 | 10 | ||
| 7 | 1R9T|1|R | Title: RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE | X-RAY DIFFRACTION | 3.5 | 10 |
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