Equivalence class NR_4.0_17565.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4BY7|1|P (rep) | 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' | synthetic construct | Synthetic | elongating RNA Polymerase II-Bye1 TLD complex | X-ray diffraction | 3.15 | 2013-09-11 | ||
| 2 | 2JA7|1|3 | 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' | synthetic construct | Synthetic | CPD lesion containing RNA Polymerase II elongation complex C | X-ray diffraction | 3.8 | 2007-02-20 | ||
| 3 | 2JA7|1|6 | 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' | synthetic construct | Synthetic | CPD lesion containing RNA Polymerase II elongation complex C | X-ray diffraction | 3.8 | 2007-02-20 | ||
| 4 | 2JA6|1|P | 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' | synthetic construct | Synthetic | CPD lesion containing RNA Polymerase II elongation complex B | X-ray diffraction | 4 | 2007-02-20 | ||
| 5 | 4BY1|1|P | 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' | synthetic construct | Synthetic | elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP | X-ray diffraction | 3.6 | 2013-09-11 | ||
| 6 | 2JA5|1|P | 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' | synthetic construct | Synthetic | CPD lesion containing RNA Polymerase II elongation complex A | X-ray diffraction | 3.8 | 2007-02-20 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_17565.1 | NR_all_04564.1 | 4.0 | (3) 2JA7|1|6, 2JA7|1|3, 2JA5|1|P | (3) 4BY7|1|P, 4BY1|1|P, 2JA6|1|P | (0) |
| NR_4.0_17565.1 | NR_all_28845.1 | 4.0 | (2) 4BY7|1|P, 4BY1|1|P | (4) 2JA6|1|P, 2JA5|1|P, 2JA7|1|6, 2JA7|1|3 | (0) |
| NR_4.0_17565.1 | NR_all_60481.1 | 4.0 | (1) 2JA6|1|P | (5) 4BY7|1|P, 4BY1|1|P, 2JA7|1|6, 2JA7|1|3, 2JA5|1|P | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2JA5|1|P | Title: CPD lesion containing RNA Polymerase II elongation complex A | X-RAY DIFFRACTION | 3.8 | 11 | ||
| 2 | 2JA7|1|3 | Title: CPD lesion containing RNA Polymerase II elongation complex C | X-RAY DIFFRACTION | 3.8 | 11 | ||
| 3 | 2JA7|1|6 | Title: CPD lesion containing RNA Polymerase II elongation complex C | X-RAY DIFFRACTION | 3.8 | 11 | ||
| 4 | 4BY1|1|P | Title: elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP | X-RAY DIFFRACTION | 3.6 | 10 | ||
| 5 | 4BY7|1|P | Title: elongating RNA Polymerase II-Bye1 TLD complex | X-RAY DIFFRACTION | 3.15 | 10 | ||
| 6 | 2JA6|1|P | Title: CPD lesion containing RNA Polymerase II elongation complex B | X-RAY DIFFRACTION | 4 | 11 |
Coloring options: