Equivalence class NR_4.0_14287.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4YCP|1|B (rep) | Transfer RNA | tRNATrp | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp | X-ray diffraction | 2.55 | 2015-04-22 |
| 2 | 4V5R|1|CY | Transfer RNA | A-SITE TRNA TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 3 | 4V5R|1|AY | Transfer RNA | A-SITE TRNA TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 4 | 4V5L|1|AY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
| 5 | 4V5S|1|CY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 6 | 4V5S|1|AY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 7 | 4V5Q|1|CY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 8 | 4V5Q|1|AY | Transfer RNA | A-SITE TRNA G24A TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 9 | 4V5P|1|CY | Transfer RNA | A-SITE TRNA A9C TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 10 | 4V5P|1|AY | Transfer RNA | A-SITE TRNA A9C TRP-TRNA TRP, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4V5L|1|AY | Title: The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-RAY DIFFRACTION | 3.1 | 67 | ||
| 2 | 4V5S|1|AY | Title: The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 | ||
| 3 | 4V5S|1|CY | Title: The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 | ||
| 4 | 4V5Q|1|CY | Title: The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 | ||
| 5 | 4V5Q|1|AY | Title: The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 | ||
| 6 | 4V5P|1|CY | Title: The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 | ||
| 7 | 4V5P|1|AY | Title: The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 67 | ||
| 8 | 4V5R|1|AY | Title: The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 | ||
| 9 | 4V5R|1|CY | Title: The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 67 | ||
| 10 | 4YCP|1|B | Title: E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp | X-RAY DIFFRACTION | 2.55 | 62 |
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