Equivalence class NR_4.0_13523.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3R1C|1|Q+ 3R1C|1|R (rep) | RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3') | Crystal structure of GCGGCGGC duplex | X-ray diffraction | 2.05 | 2011-06-01 | ||||
| 2 | 3R1C|1|T+ 3R1C|1|U | RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3') | Crystal structure of GCGGCGGC duplex | X-ray diffraction | 2.05 | 2011-06-01 | ||||
| 3 | 3R1C|1|M+ 3R1C|1|N | RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3') | Crystal structure of GCGGCGGC duplex | X-ray diffraction | 2.05 | 2011-06-01 | ||||
| 4 | 3R1C|1|A+ 3R1C|1|B | RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3') | Crystal structure of GCGGCGGC duplex | X-ray diffraction | 2.05 | 2011-06-01 | ||||
| 5 | 3R1C|1|O+ 3R1C|1|P | RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3') | Crystal structure of GCGGCGGC duplex | X-ray diffraction | 2.05 | 2011-06-01 | ||||
| 6 | 3R1C|1|V+ 3R1C|1|Z | RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3') | Crystal structure of GCGGCGGC duplex | X-ray diffraction | 2.05 | 2011-06-01 | ||||
| 7 | 3R1C|1|a+ 3R1C|1|b | RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3') | Crystal structure of GCGGCGGC duplex | X-ray diffraction | 2.05 | 2011-06-01 | ||||
| 8 | 3R1C|1|G+ 3R1C|1|H | RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3') | Crystal structure of GCGGCGGC duplex | X-ray diffraction | 2.05 | 2011-06-01 | ||||
| 9 | 3R1C|1|S+ 3R1C|1|Y | RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3') | Crystal structure of GCGGCGGC duplex | X-ray diffraction | 2.05 | 2011-06-01 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_13523.1 | NR_all_15379.1 | 5.0 | (8) 3R1C|1|A+3R1C|1|B, 3R1C|1|T+3R1C|1|U, 3R1C|1|S+3R1C|1|Y, 3R1C|1|Q+3R1C|1|R, 3R1C|1|O+3R1C|1|P, 3R1C|1|M+3R1C|1|N, 3R1C|1|V+3R1C|1|Z, 3R1C|1|G+3R1C|1|H | (0) | (5) 3R1C|1|K+3R1C|1|L, 3R1C|1|C+3R1C|1|D, 3R1C|1|I+3R1C|1|J, 3R1C|1|W+3R1C|1|X, 3R1C|1|E+3R1C|1|F |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_13523.1 | NR_4.0_13523.2 | 9.16 | (8) 3R1C|1|Q+3R1C|1|R, 3R1C|1|O+3R1C|1|P, 3R1C|1|M+3R1C|1|N, 3R1C|1|a+3R1C|1|b, 3R1C|1|G+3R1C|1|H, 3R1C|1|V+3R1C|1|Z, 3R1C|1|T+3R1C|1|U, 3R1C|1|S+3R1C|1|Y | (0) | (2) 3R1C|1|i+3R1C|1|j, 3R1C|1|E+3R1C|1|F |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3R1C|1|a+3R1C|1|b | Title: Crystal structure of GCGGCGGC duplex | X-RAY DIFFRACTION | 2.05 | 8 | ||
| 2 | 3R1C|1|A+3R1C|1|B | Title: Crystal structure of GCGGCGGC duplex | X-RAY DIFFRACTION | 2.05 | 8 | ||
| 3 | 3R1C|1|V+3R1C|1|Z | Title: Crystal structure of GCGGCGGC duplex | X-RAY DIFFRACTION | 2.05 | 8 | ||
| 4 | 3R1C|1|T+3R1C|1|U | Title: Crystal structure of GCGGCGGC duplex | X-RAY DIFFRACTION | 2.05 | 8 | ||
| 5 | 3R1C|1|O+3R1C|1|P | Title: Crystal structure of GCGGCGGC duplex | X-RAY DIFFRACTION | 2.05 | 8 | ||
| 6 | 3R1C|1|S+3R1C|1|Y | Title: Crystal structure of GCGGCGGC duplex | X-RAY DIFFRACTION | 2.05 | 8 | ||
| 7 | 3R1C|1|M+3R1C|1|N | Title: Crystal structure of GCGGCGGC duplex | X-RAY DIFFRACTION | 2.05 | 8 | ||
| 8 | 3R1C|1|Q+3R1C|1|R | Title: Crystal structure of GCGGCGGC duplex | X-RAY DIFFRACTION | 2.05 | 8 | ||
| 9 | 3R1C|1|G+3R1C|1|H | Title: Crystal structure of GCGGCGGC duplex | X-RAY DIFFRACTION | 2.05 | 9 |
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